Detailed information of Bpl_scaf_58896-4.11 in Gigantidas platifrons Gene info
Gene IDAnnotationScaffoldStartEndStrand
Bpl_scaf_58896-4.11CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATEDBpl_scaf_58896371104423932+

Gene Structure
More details in Jbrowse Sequence
CDS
Transcript
Protein

Gene family
Gene familySubfamily
Ubiquitin FamilyE3|E3 activity RING|PHD

Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00176SNF2-rel_domSNF2-related domainDomainInterproscan
PF00271Helicase_CHelicase conserved C-terminal domainDomainInterproscan
PF00385ChromoChromo (CHRromatin Organisation MOdifier) domainDomainInterproscan
PF00628PHDPHD-fingerDomainInterproscan
PF06461CHDII_SANT-likeCHD subfamily II, SANT-like domainDomainInterproscan
PF06465DUF1087CHD subfamily II, DUF1087DomainInterproscan
PF08073CHDNTCHDNT (NUC034) domainDomainInterproscan
PF08074CHDCT2CHDCT2 (NUC038) domainDomainInterproscan

InterPro
InterPro termTypeDescriptionSource
IPR000330DomainSNF2, N-terminalInterproscan
IPR000953DomainChromo/chromo shadow domainInterproscan
IPR001650DomainHelicase, C-terminal domain-likeInterproscan
IPR001965DomainZinc finger, PHD-typeInterproscan
IPR009462DomainCHD subfamily II, SANT-like domainInterproscan
IPR009463DomainDomain of unknown function DUF1087Interproscan
IPR011011Homologous_superfamilyZinc finger, FYVE/PHD-typeInterproscan
IPR012957DomainCHD, C-terminal 2Interproscan
IPR012958DomainCHD, N-terminalInterproscan
IPR013083Homologous_superfamilyZinc finger, RING/FYVE/PHD-typeInterproscan
IPR014001DomainHelicase superfamily 1/2, ATP-binding domainInterproscan
IPR016197Homologous_superfamilyChromo-like domain superfamilyInterproscan
IPR019787DomainZinc finger, PHD-fingerInterproscan
IPR023780DomainChromo domainInterproscan
IPR027417Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR038718Homologous_superfamilySNF2-like, N-terminal domain superfamilyInterproscan
IPR049730DomainSNF2/RAD5-like, C-terminal helicase domainInterproscan

PANTHER
PANTHER termDescriptionSource
PTHR45623CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATEDInterproscan

Gene Ontology
GO termsCategoryDescriptionSource
GO:0000122Biological Processnegative regulation of transcription by RNA polymerase IIInterproscan
GO:0000785Cellular ComponentchromatinInterproscan
GO:0003677Molecular FunctionDNA bindingInterproscan
GO:0003682Molecular Functionchromatin bindingInterproscan
GO:0005524Molecular FunctionATP bindingInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0006338Biological Processchromatin remodelingInterproscan
GO:0016887Molecular FunctionATP hydrolysis activityInterproscan
GO:0042393Molecular Functionhistone bindingInterproscan
GO:0140658Molecular FunctionATP-dependent chromatin remodeler activityInterproscan

KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K11643CHD4, MI2B; chromodomain-helicase-DNA-binding protein 4EC:3.6.4.12
Viral carcinogenesis ko05203PMID: 28812709
Human papillomavirus infection ko05165PMID: 28812709

Expression pattern
 1. Expression trend for Bpl_scaf_58896-4.11 global RNA-seq network
TOP