Gene detail

Detailed information of Bpl_scaf_58640-0.8 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_58640-0.8	CALCIUM BINDING PROTEIN	Bpl_scaf_58640	12689	20488	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Bpl_scaf_58640-0.8

GAACCAGTCGGAGGAACAAGTGCTCTTAATTTCAACCAATCACTTTCGTCGACACGATTCAGCTCGTTCTTACATCCGGGGAATTCCAAGCGCCTGTATCGTTTCGAAGATCAACAAACAGTTATGACCAGTTACGGTAAAAAGACTGCATTAGCTGGTGGGGGAAGGAAGAAAGGTGGAGCAAAGCCAGACCTGACAGAAGAACAGAAACAAGAAATAAGAGAGGCATTTGATTTGTTTGATACAGATGGTTCAGGGACCATTGATGCTAAAGAATTGAAGGTGGCTATGAGAGCATTAGGATTTGAGCCAAAGAAAGAAGAAATAAAGAAAATGATACAAGAAATAGATAAAGACGGATCAGGTACCATTGATTTCAATGACTTTCTTACAATCATGACACAAAAAATGAGTGAAAAAGACGTAAAAGAAGAGATTCTGAAAGCATTTAGACTTTTTGATGATGATGAGACTGGAAAAATATCATTTAGGAATTTAAAACGAGTGGCAAAAGAATTAGGTGAAAATCTGACAGATGAAGAATTACAGGAAATGATTGATGAGGCTGACCGTGATGGCGACGGAGAAATCAACCAGGAAGAATTTCTAAAAATTATGAAAAAGACAAGTTTATATTAATAGAAACTATATTATTTCAATCTAGTACCACCAGATCTGAGTTATCTGTTCTTGAAAAATTCCATTCATAAACTTCAAGGCATTTATTTTTCATTGGGACCAAAAGGTATGAATGAGAATGAATGAATGAATGGTTAGATGAGTATATGATGATGATTGAGCAATTCTTGAAAGATCTGTATTTAAATTACCGGTAGTATTTGTCAGTTTGAACAACATAGTAAGCCAGGCCCTATTTCAGTGAAACTTTTTGTCTCTTTTTGTTTATTTATTTATTAGTTATCATACAATTCTTTATGGTTGTTTTATTCTATTATGCATACATTTTTATTGTATATGTGTAAATAAGTAAAAATTAAATAAAAAAAAGAATTTCTAAATTCTTGTTGCAAATGTTAATTTTTATCCGATTTGTGCAATGAAAGGCAAATTTATGCACAATCAAAATATGGACAATAGATATATCAGTCAACCATAAATTTCGTTAAGAATTATGAGTTGTGCCCCTTGAAATAAGAACATGTCAAATTGTTCTTGTTAGAGCACTAGCAAATAAATTCCTCAGCAGATTCAAACACAATCTATGTTATATTGATTGATTTATTATTGTGTAACGTCCAGCAAGTGAATGTCATGTTGAATTTCCAATCAGAACAAATAACTAAACAACATCTAACGAACATTCCTGACAAGTTAGGTTCAAAGGTCCAAGCAATTTCAGTTGATATTTGTTTTTAGAAATCTCAGAAACCGCTTGGCATATTTGAGTTTGATATTATAAGAAAGTTTATTAAATGGTTCTCTACTACTTTTGAGTTTTTGATGTCAATTTTTGTGCCAAATTAAACCTAACCTTACTAGCATGGCCCTTTTGTAACATGACTAGCATATATGTAACTTCTCCTAATATAAGGAAACTAGAATCATAAAGCTAATTTCCTTAAATTTAAACATATACCAGGCATCTTGTTTTACAGACAGCAATTCCAAGCTACTAAGTCAAAGGGGGATAACTCGTAATTCATAAAAGATACATATTAATGAATTATGACTTTGATGAGTGCCACATGTGGGGTACATGAGTTCACTCCCGGTTTTATTGGGGTTCATATTGCTGTAGTTTCCTGTAATGTTTTGTGGATCATAGTTTGTCCTCTTTCCTTTGGCCATAGTATTGTCTGTCCTTTGATTTAGGCCTAAATTAAAATATTGTTTGTTTCCCCTTTATGACTGACTCGCCTGAAAATTTTTTACAGCCCATTACGTGAAGAAATTTTTTTTGGATGATTTTCCGTTTCCGGAAATTGTCCGTGTTCGATTCCGGCTTTGGATTCGTATTAGGTAATACTCTTCTGGAACGTACCGTTAAAAAAAACATTTACCTACCTACCCAGATCTTTCATGCTAGGGTCGGAAAGGGG

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13499	EF-hand_7	EF-hand domain pair	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000629	Conserved_site	ATP-dependent RNA helicase DEAD-box, conserved site	Interproscan
IPR002048	Domain	EF-hand domain	Interproscan
IPR011992	Homologous_superfamily	EF-hand domain pair	Interproscan
IPR018247	Binding_site	EF-Hand 1, calcium-binding site	Interproscan
IPR050145	Family	Calmodulin and Centrin Calcium-Binding Families	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23050	CALCIUM BINDING PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000278	Biological Process	mitotic cell cycle	Interproscan
GO:0005509	Molecular Function	calcium ion binding	Interproscan
GO:0005813	Cellular Component	centrosome	Interproscan
GO:0005814	Cellular Component	centriole	Interproscan
GO:0007099	Biological Process	centriole replication	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K16465	CETN1; centrin-1	-	Chromosome and associated proteins	ko03036	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_58640-0.8 global RNA-seq network