| Gene ID | Annotation | Scaffold | Start | End | Strand |
|---|---|---|---|---|---|
| Bpl_scaf_58266-6.6 | PRE-MRNA PROCESSING PROTEIN PRP39-RELATED | Bpl_scaf_58266 | 643493 | 670555 | + |
| CDS | |||||
| Bpl_scaf_58266-6.6 | |||||
| Transcript |
| Bpl_scaf_58266-6.6 |
| Protein |
| Bpl_scaf_58266-6.6 |
| Gene family | Subfamily |
|---|---|
| - | - |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR003107 | Repeat | HAT (Half-A-TPR) repeat | Interproscan |
| IPR011990 | Homologous_superfamily | Tetratricopeptide-like helical domain superfamily | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR17204 | PRE-MRNA PROCESSING PROTEIN PRP39-RELATED | Interproscan |
| GO terms | Category | Description | Source |
|---|---|---|---|
| GO:0000243 | Cellular Component | commitment complex | Interproscan |
| GO:0000395 | Biological Process | mRNA 5'-splice site recognition | Interproscan |
| GO:0005515 | Molecular Function | protein binding | Interproscan |
| GO:0005685 | Cellular Component | U1 snRNP | Interproscan |
| GO:0006396 | Biological Process | RNA processing | Interproscan |
| GO:0030627 | Molecular Function | pre-mRNA 5'-splice site binding | Interproscan |
| GO:0071004 | Cellular Component | U2-type prespliceosome | Interproscan |
| KO | Enzyme | Enzyme ID | pathway | mapID | Source |
|---|---|---|---|---|---|
| K13217 | PRPF39, PRP39; pre-mRNA-processing factor 39 | - | Spliceosome | ko03041 | PMID: 28812709 |
| 1. Expression trend for Bpl_scaf_58266-6.6 global RNA-seq network |
Maintained by Dr. Jiajie She in Longjun Wu's Lab & Pei-yuan Qian's Lab and supported by Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou) & The Hong Kong University of Science and Technology
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