Gene detail

Detailed information of Bpl_scaf_58126-1.12 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_58126-1.12	TRANSCRIPTION FACTOR CP2	Bpl_scaf_58126	76387	114593	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Bpl_scaf_58126-1.12

TTTTTGATGAAAGGCCAAGGCCAAAGACTGAGCACAGTGTGTTTTGAAATCAACGAAAGATATATCACTTGTATTGTTGATTTAGAAGAAATTTGAAGTAAATTAAAGGACCTGGGTGGAACAGTGGCTAAGGTCGACGACTTTGACGTCCAGTGTGGACTCCAGTGTAATCCTGGTGACGTAGGTTCAAGCCTGGATTATACCCATCTTTACTTACCTACAATATTTAGTGGTGGTAGTCAAATGTCATACGGTTGGTCATCAGATGAACCCAGTAACCAAGGTAGTAAGCGGACCAAGATGTCCCATCACAATATCAGCATCACAAGCTGGGATATTAACGACTCCCTGGCAGCCGATTTTGATGGGTCACTATCTGGACTCGGTGCTGACTTAGGGTCTGCAACTTATAATATGAGTGAAGCCTTATTAGCTTTACCAGTCTTCAAACAGGAGAACCTTGATACAGGGTTTCAGTATATATTAGGGGCTGCTACCTCTCCAGCTGTCAAACTAAATGAAGAAACACTCACATATTTAAATCAAGGCCAACCTTATGAATTAAAGATAAAGAAGTTAGGAGATCTGTCAGACCTTCAGGGTAAATACTTACGGAGTATTATACGTGTGTGTTTTCACGAGAGGAGATTGCAGTATATGGAGAAGGAACAGATGGAATCCTGGAGACAGATGAGACCAGGGGAGAGAATTTTAGAGATAGACATTCCTTTATCCCATGGTATAATACATTATAAAGCAGACACTTTAAGTTTGAATACATTAGAATTTATCTGGGATCCAACGAAGGAATGTGGTATATATGTGAAAGTACATTGTATAAGTACAGAGTTTACCCCTAAAAAACATGGTGGAGAGAAAGGGGTGCCATTCAGGGTGCAAGTAGAGACTTATTCTTATGGTGATGAAGAATCAAAACTGTTACACTGTGCTTCATGTCAAGTCAAGGTATTTAAGCCAAAGGGTGCAGACAGAAAACATAAAACAGACAGAGAAAAGATTGATAAACTCAATGAAACAGATAAGGAAAAATATCAGCCTTCATATGAATGTACAGTTTTAACACAAATAAATGTAGATCAAATGTCCTCAACCACCTTACCAGATGTGACACTTAGTCCAAGTAATGCATCTTTTACTGGCAAAGGGGGATCCTTTGCCAGCCTCACACAAAGTTTCTCAAAAATAAACACAGGAACACCATCTCCTACAGCAACAGTACCCAATCAACAATCCTCTTCAAATTTTAGTAGTGCTAGTGATGAGGATGACCCTAATATTAAATCTCTGGATATCAAGCCTAATATACAGGACAAAAACAAAATAGTAGATGGGAGTCCCCTCCCCTCTGAAGCCTCAGCTGATACAGTTGCCTCCTGGCTACAAATAAACAGATTTAGTAACTATGTCAGAATATTCCAAAATTTCTCAGGTCCAGATATATTACGTCTAACAAGAGATGATCTCATACAGATATGTGGTATAGCTGATGGTATACGACTAAACAATGCATTACAGTCAAAAGCTGTAAGGCCTCGCTTGACAATATTTGTATGTCAAGAAACAGATTCAGTATATCATGCCCTTTATCTGGATACATTCACTAGCCAAGAATTGATTGGTAAACTTGCCAAGTTGTACAGTGTTGCAAGTCAACAGATTGCCGAACTTTACTGCTCGGGACCCTCAGGGATATACATTCTTACTACGAACGAGGTTGTTCAGAATTTTAAAGACCAAGCTAGATTTATAGTGGAAGCCATGAAAGATGAAAATTCACAGCAATATAAAATTTTATTGAAAGAAATGAGCTGAAAAATAACAATTTTAATGTTCAAGGTGATGACATTTTTAATGCAGAGCAGATGAAATAAAATTATATGCTTGAAGACAATTACTCAATCTTCTGGAAGACCCAGATTTTAAAAGTCTCAAAAATGTTTTGTTGTCATGACAGCATACTGTGTGTTGAATTTGGCAGCAAATATTGGTGGGTTTTTTTTTAAAACATTTGTTGTGTTACATGTTTTAGTTGTTATTCTGGCTGGCAACAGGAATAGACCACTGACACATTTCCAACTTTGATTTTAAAATTATATGTTTTTTACAGGAGTTATTTCCCTTTAAAGGCAGGCAAACAAACCCCCTTTCATGTAAAGTTCAATGAAAATAAGATATATATTTTCATATAATCTATTCAAAATTTAATGTTATAACAACTTGTGCATTTTCTATTTGCTATGAAATTATGCTATGATTTTTAAGGTATCAAATAGGTCTGAGAAAATTACACTCAAATTCGTTATCCTTTCCATTGCTTTTGCTAGACTGGGTACCAGTTTGCCTGTTGTAAGGGAAATAACTCTTATGAAAAGGGTATGAAAACTTATAATTTTAGAATCAAATCTGGACAGTACAAAAGGTGTATTATCATGTCATCAAAGTTGTAAATGATTTCCATATGTTCTATTCCATGAAGTGTGAGAGGATGTATACATAAGACTGACATATAAAATGCTCTCATGTGCAGGAGTAGAAAAAACTAATTTAGGTGTTTTATATATATTTTTTGTTAGATCACTGCCAATCATAGTTTAGATTCCCTATTTTTGAATATTTTTCTTTGCATTGTGGGAATATAAGATTAACTTACAAATATTAATGTTCATCTAAAAAAAACTTGAAAGTTTTAAATTAGAAATGATCCCTGTGTAGAGGAGATCAAATTTGTAAAAAATGAAGTTGATTCTTCATGTGGAATGGCTAGTAGGGTTATAAAAGGGAGAAGTTACCTATATCTTTGTTTTTTTAAATGTTAAAAAAATCTTCTATAGTAGATGAGTGATACATGTTTATGTGAGTCTATAGTAGATGAGTGATACATGTTTATGTGAGTCTCTTGTTTTGTTGTTGTTTTGTTTTTCTTTATTTCTATTGTTGAGCAAGATAAAATCAAGTGTTATAACAAGATTAACGATGTGTCCTGTTCTTTATGTCATTTGGAAAGGAAATGGATCATTTGAGTGGAAATGGATGGGAGATACTGTTGACAAATGTTAATATTATAAGGTTACAATTTGTTATCCTATACATATATCAAGATTTTTTCATATCAGCTTTTTTTAATCATACATTTTTTTTGTATTAGTATCAAACAGGCATGGGGAGATTTCATGGTTTTATGATTCGTGTATACATGTTTTTTGTATTAGTATCAAACAGGCATGGGGAGATTTCATGGTTTTATGATTCGTGTATACATGTTTTATCATTCGTTTATACATGTTTTATCATTCGTGTATACATGTTTTTTTCCTTGTGAAATGAATTGTTTTATTGTTTTTTATTTTTAGTCTATATTTCACATTTATTTGATTCTAAGAATAAACTATCGTTGTTAACCCTTGACTGATTGTGCTCCAATACCCTTTATTCAACAACCATGGTTGCTAGAAAGAAAGATCCCTGTACTCGTGAATATTTCATCTTAAAATTTGATTGGCTCCAATATGTTTTCATCATGGGAATTATTTGCACTTACATGAAAATAATTTTACGCTTCTTTCATACTTTAAATAGGTAGTAAACAAAAAAAAACCATGGTTTTACATTAAAAATTATTATTTTTGTGGTATATCAACCGATCGTAAGATTTGAGGATGGTTATGTTGCTATGGAAAAATCTAATTGATGGCTCAGTAACAGAACAATACTAACGAGTAATTATCTTTCAAGTGTCCCAAAGGATGTTGAGTAGAGAATGTGGGTTACTGACAATTAAGAAAAACCTGATTCCGAAAAATTAGACAAGAATGAAAATAACAGTACTGGTACCAGTAGTTTTGAACATAGAACTTTGTCATTTCACTGTATTTCCAAAAACAAGGTTGTGATATAATAAACAGAATTACAAACACTAATAAGATAGACTGATTCCAGCTGAAATTAATATTGACTAATAATTATATACATTTAGAATAAACTGCCTTGATGTTTACAGCTATTGATTATCCTAATTTTGTCATAAGGCTTGCTGATGTATGTATGTATAGAAGATAAGGTCCAGATTACATGTATTTGAATAAATAAAATGCTCT

Protein

Gene family

Gene family	Subfamily
Transcription Factors Family	CP2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04516	CP2	CP2 transcription factor	Family	Interproscan
PF18016	SAM_3	SAM domain (Sterile alpha motif)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007604	Domain	CP2 transcription factor	Interproscan
IPR013761	Homologous_superfamily	Sterile alpha motif/pointed domain superfamily	Interproscan
IPR040167	Family	Transcription factor CP2-like	Interproscan
IPR041418	Domain	SAM domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11037	TRANSCRIPTION FACTOR CP2	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000978	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0001228	Molecular Function	DNA-binding transcription activator activity, RNA polymerase II-specific	Interproscan
GO:0003700	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K09275	TFCP2; transcription factor CP2 and related proteins	-	Transcription factors	ko03000	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_58126-1.12 global RNA-seq network