| Gene ID | Annotation | Scaffold | Start | End | Strand |
|---|---|---|---|---|---|
| Bpl_scaf_57850-0.3 | SKP1 | Bpl_scaf_57850 | 26067 | 47203 | + |
| CDS | |||||
| Bpl_scaf_57850-0.3 | |||||
| Transcript |
| Bpl_scaf_57850-0.3 |
| Protein |
| Bpl_scaf_57850-0.3 |
| Gene family | Subfamily |
|---|---|
| Ubiquitin Family | E3|E3 adaptor Cullin RING|SKP1 |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF01466 | Skp1 | Skp1 family, dimerisation domain | Domain | Interproscan |
| PF03931 | Skp1_POZ | Skp1 family, tetramerisation domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR001232 | Family | S-phase kinase-associated protein 1-like | Interproscan |
| IPR011333 | Homologous_superfamily | SKP1/BTB/POZ domain superfamily | Interproscan |
| IPR016072 | Domain | SKP1 component, dimerisation | Interproscan |
| IPR016073 | Domain | SKP1 component, POZ domain | Interproscan |
| IPR016897 | Family | S-phase kinase-associated protein 1 | Interproscan |
| IPR036296 | Homologous_superfamily | SKP1-like, dimerisation domain superfamily | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR11165 | SKP1 | Interproscan |
| GO terms | Category | Description | Source |
|---|---|---|---|
| GO:0005634 | Cellular Component | nucleus | Interproscan |
| GO:0005737 | Cellular Component | cytoplasm | Interproscan |
| GO:0006511 | Biological Process | ubiquitin-dependent protein catabolic process | Interproscan |
| GO:0031146 | Biological Process | SCF-dependent proteasomal ubiquitin-dependent protein catabolic process | Interproscan |
| GO:0097602 | Molecular Function | cullin family protein binding | Interproscan |
| KO | Enzyme | Enzyme ID | pathway | mapID | Source |
|---|---|---|---|---|---|
| K03094 | SKP1, CBF3D; S-phase kinase-associated protein 1 | - | Protein processing in endoplasmic reticulum | ko04141 | PMID: 28812709 |
| Ubiquitin mediated proteolysis | ko04120 | PMID: 28812709 | |||
| Wnt signaling pathway | ko04310 | PMID: 28812709 | |||
| Hedgehog signaling pathway - fly | ko04341 | PMID: 28812709 | |||
| TGF-beta signaling pathway | ko04350 | PMID: 28812709 | |||
| Cell cycle | ko04110 | PMID: 28812709 | |||
| Cell cycle - yeast | ko04111 | PMID: 28812709 | |||
| Oocyte meiosis | ko04114 | PMID: 28812709 | |||
| Circadian rhythm | ko04710 | PMID: 28812709 | |||
| Herpes simplex infection | ko05168 | PMID: 28812709 |
| 1. Expression trend for Bpl_scaf_57850-0.3 global RNA-seq network |
Maintained by Dr. Jiajie She in Longjun Wu's Lab & Pei-yuan Qian's Lab and supported by Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou) & The Hong Kong University of Science and Technology
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