Detailed information of Bpl_scaf_57484-0.15 in Gigantidas platifrons Gene info
Gene IDAnnotationScaffoldStartEndStrand
Bpl_scaf_57484-0.15ZINC FINGER CCHC-TYPE AND RNA-BINDING MOTIF-CONTAINING PROTEIN 1Bpl_scaf_574846095778970-

Gene Structure
More details in Jbrowse Sequence
CDS
Transcript
Protein

Gene family
Gene familySubfamily
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Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00076RRM_1RNA recognition motifDomainInterproscan
PF00098zf-CCHCZinc knuckleDomainInterproscan

InterPro
InterPro termTypeDescriptionSource
IPR000504DomainRNA recognition motif domainInterproscan
IPR001878DomainZinc finger, CCHC-typeInterproscan
IPR003954DomainRNA recognition motif domain, eukaryoteInterproscan
IPR012677Homologous_superfamilyNucleotide-binding alpha-beta plait domain superfamilyInterproscan
IPR034219DomainZCRB1, RNA recognition motifInterproscan
IPR035979Homologous_superfamilyRNA-binding domain superfamilyInterproscan
IPR036875Homologous_superfamilyZinc finger, CCHC-type superfamilyInterproscan
IPR044598FamilyZinc finger CCHC-type and RNA-binding motif-containing protein 1Interproscan

PANTHER
PANTHER termDescriptionSource
PTHR46259ZINC FINGER CCHC-TYPE AND RNA-BINDING MOTIF-CONTAINING PROTEIN 1Interproscan

Gene Ontology
GO termsCategoryDescriptionSource
GO:0000398Biological ProcessmRNA splicing, via spliceosomeInterproscan
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0003723Molecular FunctionRNA bindingInterproscan
GO:0005689Cellular ComponentU12-type spliceosomal complexInterproscan
GO:0008270Molecular Functionzinc ion bindingInterproscan

KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K13154ZCRB1; U11/U12 small nuclear ribonucleoprotein 31 kDa protein-Spliceosomeko03041PMID: 28812709

Expression pattern
 1. Expression trend for Bpl_scaf_57484-0.15 global RNA-seq network
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