Gene detail

Detailed information of Bpl_scaf_57223-1.7 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_57223-1.7	BARDET-BIEDL SYNDROME 12 PROTEIN	Bpl_scaf_57223	127896	148983	-

Gene Structure

More details in Jbrowse Sequence

CDS

Bpl_scaf_57223-1.7

CAAACACGTATATTATCTGATAGTATTCCAACATCCCCTCAAAGACTATCAAAACTTGATAGTGGAATCATAGTGAATCAAGATGGACGACAGGATCCGTCATCTTCTCAAAGACTAGCAAAACTTGATAGTGGAATTATAATGAATCAAGGTGGACGTCGGGATCCGACATACCCTCAAAGACTAGCAAAACTTGATAGTGGAATCATGATGGATCAAGAGGGACGACACGAATCAGATGATGAATTTGATGATTGTTTTCTTACAGATTCGTCCACCGACTTGTCCAATAACTCATCCACTCACCGAATATCCTCTTGTAATAAGCAGACGAACACTCTAGCTAATAAAACTGCTGAAATAAACAGTGATTTAAGGTGTACATCTGATAAAAAGGCTGGGAGACACTTTGAACATGAATTAGAAACAAACTTGGACAAGAGATACAAGGATTGTAATAAATATCACTCACAATCTTCAGACGTTATAGAATCTGATAAGAAATATCATACACAATCTTTAGACGTTGTAGAATCTGATAATAAATATGATACTCAATCTTCAGATGTTGTAGAATCTGAAAATAGATATCATACTCAACCTTCAGACGTTGTAGAATCTGATAATAAATATCATGCACAATCTTCAGATGTTGTAGAATCTGATAATAAATATCATGCACAATCTTCAGACGTTGTAGAATCTGATAATAAATATCATACACAATCTTCAGACATTGTAGAATCTGATGTCAGAATGCATAAAGATGAAACCCGTGGTAATCGGCTGTTTTCTTGTGCAGATTTACAAGAAAATGAGACGGTTGTAAAAAAAATCAGTAATGACACAAAATCTAAATTATTGAGAGAAAATATGACTTTAAGCAAGCTGGATGCTTTACTCAAAATTATGACACCTTTCGCTGATAATAAAGTTTGTGCTTCAAAAATTTTAAGCAGAAGCAGACACTGTAAGTTGTTAGGTAGTGAAGACATAGGAAATATGTCACATACAACACAAGAAGATAATGCAGGGCCAGAATTACTGGACGATTCAGAAAATGTTGAATTGTGTGTAGGAAATATATCTCATACTACAACACGGGAAGATAATACAGGGCCAGAATTACAGGACGTTTCAGAAAATGTTGAATTACATGTAGGTAATATGTCCCATACTACAACGCAAGAAGATAATAAAGGGCCAGATTTTCTGGACGATTCAGAAAATCTCGAATTACATGTGAATAATCATTTAAAATCTGGACAATTTCATCCGCAAGGTTCCTCTGATGAAGTGAACGGAAGATGCAGGTTTGATGAAAATACAGCTAATTTCGGTAGCACCTCATTTGACAAATTATTATCCGATAACATGGACAAAAAATTTATGACGTTGTCACTCGGACTTAGCCATGGATCAGAGGCCATTATGAAATGTATATTGGAGGCTCGTAGATTAATGGATTGTCAGAGTGGTGATAAAATGAGATTATGCAGTGTCTGTATAGACGGTCCTTTATCACAGTCACCTGTTCTAGTACCAGGACTTGTTTTACAGATCAGAACAGAATACATTGAGTTTATCAGATGTCCATTGAGGACAGTGATAGTCAATGGTGATGTTTTACACAGCTATAAACACATTGGTCATAAAAGAACTCTTCAGTCAAGTGTAGTACAATCTGCAAGCGTAAAATGTCTGAACATGTCATGGCTGGATACTGTTGAAGAAATACTAGATCTGTATTCCATACAATGTCTGGTAGTCAGAGGATCAGTTTCAGTTGAGTTCAGTGATCAATGTTTGGCTAAAAGGATTGTTGTCCTAGATAAAGTGCCATTTAAATCATTACAGGGGCTTGCTGATCATTTTAATGTTGCTATGGTAACATACATCACAGATATATATCAGGAGAATGTGTTTGATGCTGTTATTGAGCCATATTATGATGACTGGGTAATGAAGCAGAAAAGTCATGTGATTGTTAAATCTACTGATAATAGAAACAGTGTACAGACATTGATTTTATGCCATCCTAGTCATAATGGGTGTGATTTACTGGAGCAGGAATTTAACCGTTGCATGGGTATATTATCATCTGCTTCTAATACAGGATATGTATTGCCAGGTTATGCAAGGACAGAAGAATTCATGTCACACTTCTTAACAGATCTTACAGACACCAGCAAAGATTGCTATTTGTCAGTCGTTTACGAAGAAGCTGCAAGAGGATTTCATGAATTTGTTCAAACAGTTAGATTTAACATTGGAAGTAACTCTGAATGGTGGGGTAATTGTTGTGAAAGGCTACCAGAAAATGTGTCAACCGATCCCGACATAATACAGCTGTTTAATACTATTGAGAGCAACGGAACGTTGGATCATAATATTGGGAGAAGTTATATAGTTGACGACTATGAGACGAAGTTGTCTGGATGGAGAACTGCTTTAAATACTGCTATAACAATACTTCAAATAGACTCCTTATTAATTAATGATCACTCTTTT

Transcript

Bpl_scaf_57223-1.7

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00118	Cpn60_TCP1	TCP-1/cpn60 chaperonin family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002423	Family	Chaperonin Cpn60/GroEL/TCP-1 family	Interproscan
IPR027409	Homologous_superfamily	GroEL-like apical domain superfamily	Interproscan
IPR027410	Homologous_superfamily	TCP-1-like chaperonin intermediate domain superfamily	Interproscan
IPR027413	Homologous_superfamily	GroEL-like equatorial domain superfamily	Interproscan
IPR042984	Family	Bardet-Biedl syndrome 12 protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46883	BARDET-BIEDL SYNDROME 12 PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0045494	Biological Process	photoreceptor cell maintenance	Interproscan
GO:0051131	Biological Process	chaperone-mediated protein complex assembly	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K19402	BBS12; Bardet-Biedl syndrome 12 protein	-	Cilium and associated proteins	ko03037	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_57223-1.7 global RNA-seq network