Gene detail

Detailed information of Bpl_scaf_57078-0.4 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_57078-0.4	REGUCALCIN	Bpl_scaf_57078	66	13042	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Bpl_scaf_57078-0.4

GAGCTAAAATCTTATTATATCATTGGCATGGTAGAAGAAAGTAACGATAATTTGACCCCGGGTGTGCGTACGTATGTATGTGTGGGGCTTCAATCATTTGGTCAATATTCCCGAAGGAGGCTGAAACATACGCATATTTTGTGTCTCTCTTGTTAACTGATACCGGTATTGAAACGGGAAATTATTTATCATAAACTATCCCTTTTTTTTATTTTTTTTTTTAGAATAGCCATGCCGATAGAAGTTGTGGTAAAAGATGCATGCCGCACTATAGGAGAAGGTCCCCACTGGGATGAAGCATCACAATCTCTGTATTATGTTGATATAGAAGATAAAAGCGTTAGTCGATGGAACTCTGTTACTGGGGAGAACGAAAAAATTACACTAGATCAGACAATAGGATTTGTAGTACCTTGGAAGAAAGGGGGTGTTATAATTGGCCTCGGGAAAACATTGTCCCATTTGGATTGGGAAACAAAAAAGATCACCGTACTACATGAAGTTGATCAGGGAAAAGACACCAGATTTAACGATGCAAAATGTGATCCACGGGGACGTTTATGGGCAGGTACAATGGGAACTGAGAAAACAGTGGCTGTTGTAGAAAAAGAACAAGGGTCATTATACTGTTTGTATACTGATGGTACTATCAAGAAACACGTGGATAAGGTCTCTATTTCCAATGGATTAGCTTGGTCAGCTGACAACAAAACTATGTATTATATTGACTCTATTCCCAGATGTGTGTATGCATTTGATTATGACATAGAAAATGGCAGTCTTAGCAACCGAAGGGTTATTGTAGAGCTTGAAAAGGGAACAGAACTAACAGTCGGATTTCCAGATGGTATGACAATAGACACTGAAGGAAAACTATGGGTAGCATGCTTCTTTGGTGGACGTGTTGTTCGATTTGATCCAGAAACTGGTAAACAAATTGGTGCTGTTGAAATTCCAGGATTAAGAATAACATCGTGTTGTTTTGGGGGTAAATATTATGACGAGCTGTTTGTCACTTGTAGCCGACACGGTTGTACAGAAGAAGAGCTACACAAGTTCCCGTTGACAGGATCAGTATTTAAAGTGACTGGATTAGGAGTTAAAGGATGTCCTTCGCTCATGTATGAAGGGACAAAGCTTTGAAATTCCCGTTCGTAAACGTAATGCATTAATTGGAGAGTTAACGTTTTAGTATACTGAATTGTCGACCATGACTTCCTGTTTAAATTTTGAAGTGCTTAAATAAATTGTGCAAGTCATACTATGTTTGTGTTGTGTGATATACCATTAGGCTATCCCTGTCATTATCCTCTTGGTTGATTGGTTGATTATGGTATTTAACGCCACTTTCAACAATATTTAAGCCATATCGTAGCGGTCGGTTTTATTGGTAGAGGAAACCGGAGTACCTGGAGAAAACCACCGACCTGTCGCAAGTCACTGACAAACTTTATCACATAATGTTGTATCACCTGAATGGGATTCGAACTCACAACGTTAATGGGGATAGTTACTGATTGCATAGGTAGTTGTAAATCCAACTTCCAAACGATCACAACCATGACAGCCATATTTATTAAATTCTACAATAGTCAAAGCCAGTTGAATTACGAGAAACCAAACCTTTACGTATTACTTCAAAAGTTCCTGTATAGTCACAAACATGTATTGGTTGATCAATACAGAATTTCATAATCTCAACCGATTGTATATTTTGATGACCACCTCAAGTTTTAAGGTTTCCAAACTCTCACTGATGTCCGGGGTCTCACTGGTCAGTTCTTCGAAGCTGTTCATGTTTTCCTATCTGTAATTTCAGGTATCCATGATTTAGATGAAGACTTACTGAAAATGGCCATAAACACCAATAACGCTGAAGGAACCGTCGTCGTCGCGAGCGTATGGTAGTTGGATTCATAACTACATGTGCAATCAGTGCCTATCATCACTAACGTTGTGATTTCGAATACCACTCAGGAGAGGTGTACTCGATACAACATTATGTGATAAAGTTTGTCGGTGACTTGCGGTAGGTCGGTGGTTTTCTCCGGTTTCTTCCACCAATAAAACTGACCACCACGATGTAACTGAAATATTGTTGAAAGAGGCGTTAGGCACAATAATCCTAACCTTATCACGAATTACCCTGACACTGAACATTGTTATTGAGCTCATTGGATTGGTTCCAGAATCAATTATTCTGATCCATAGAGAACCCGTTTTTAAATAAGTCATGATTTTAACACAGTGTTGATATTTTATTTGTTTGAGGTGCAAATAACCCATACGAAAACCACGATATTAATTAGTTCTTGTATACAAACTTTTTTGGAATGTAAAGGAAAGATGTAAAAACATTGATGGCGGTATGAACAGTATAATGTTTGATGCTGATGAAAGGTGATTATGTGCGAGGTGTTAATCGTTTTTACACATCGTTTTTCGTTTTTACAAATGAGAAAATAAAATCAGGAGTACATGAATATGATTTATGTTGCTCAATCTTTAGTTGTCTGTGTAGTGTTTTGTACATCGTTGTTTGTCCTGTTGTTATTTTCGTTTGGCCA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08450	SGL	SMP-30/Gluconolactonase/LRE-like region	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR005511	Family	Senescence marker protein-30 (SMP-30)	Interproscan
IPR008367	Family	Regucalcin	Interproscan
IPR011042	Homologous_superfamily	Six-bladed beta-propeller, TolB-like	Interproscan
IPR013658	Domain	SMP-30/Gluconolactonase/LRE-like region	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10907	REGUCALCIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004341	Molecular Function	gluconolactonase activity	Interproscan
GO:0005509	Molecular Function	calcium ion binding	Interproscan
GO:0019853	Biological Process	L-ascorbic acid biosynthetic process	Interproscan
GO:0030234	Molecular Function	enzyme regulator activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K01053	E3.1.1.17, gnl, RGN; gluconolactonase	EC:3.1.1.17	Carbon metabolism	ko01200	PMID: 28812709
			Degradation of aromatic compounds	ko01220	PMID: 28812709
			Pentose phosphate pathway	ko00030	PMID: 28812709
			Ascorbate and aldarate metabolism	ko00053	PMID: 28812709
			Caprolactam degradation	ko00930	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_57078-0.4 global RNA-seq network