Gene detail

Detailed information of Bpl_scaf_56904-3.5 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_56904-3.5	UBIQUITIN CONJUGATING ENZYME 7 INTERACTING PROTEIN-RELATED	Bpl_scaf_56904	357897	367155	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Bpl_scaf_56904-3.5

ATGGAAAGAACAGAAGATGGCACATCAATTTGTAAACAAAGAAAGTTGTCAGAGAATGGCTTAGTAAGTAGCCATGAAAATTTTGAGGACACACAAGAATCGGGGAATACTGAAGAGTACAGTAATAGTATGTTTAGTCAAGAAACACAGGCATATTCTCCACAACTTACTACTGAGCCAGATAATGAAGAGGAACGAGACAATGATGTGACATCCATTAGTATTGGGGAAGAAGATGTTCCCAAAATGAACAAGTTGAAATCCGTAATGGAGGATGCTAAATTTATTGGAGATATTTTGAATAATATTGATGTATCAGATATTTATGATAAACTTAAAGGAATTAGACAGAACCCAAATAGAATAGAAATTGTTACTAATCAACTCTTAGAAAGTAATACTAAACAGAAAACAGCTGAGAAACCTACATCTAATGTCTTTATGCAAGATTTTGTTAAAATAATTGACTTAACTACAACAAACATGTCAGCATTACCTGTCTCTGCTGAGGAAATACAAGATCTTTTAAATTCAGCACAAACCAGACCAGACAGGGTAGATTATGTTTTTAGTCAAATTCTTGGTCTGTATTGTCTTAAACGACAAGGACATGGTGACCTTGTTAAAGATATGAAAACTGTTCTGGTGCAGTGTCCATGGGTTTCATTTGATGAAGTATCGAAAATGATGTTAAAGAAGAAAACTTCACCAGACAGAATGCAACAAATTTTGGATCATTTTTTACCGAAAGCTAATGATTTACAGCGTACAGATTCTGCTCTCAGTAATACATCTCTGGCAAATGATGAGTTGTATAAAGATACACGTATTATCGCTAAAGTTATGCCAGAGATTGATAGAAATGAAATTTATGCTTATTTAGAAGCACATCATCATGAAAAGAATAGAATTCACATTGTCATAGAAGAGCTGATGAAATTGAAATCTAATGGGGAAAGTCTTGATTCTTTTGATGTTACTACTGATGAGGCCATCCCTTCACACAAACCAAGTAAAGGAATATTTAATATCCAGGATGAAGTTGACGAACTTAGACAAATATTTCCAGACTGTGATCCTAATTATCTGTTTGAGCAATTAGAACAAAAGGCAGATGACAAAGAAAGAATGAAAACTGTTGCCATAGCAATGTTTGAAAATAAAAATTATCCCAAACTGAAAGAAAGAGAAGAAAGAGAGAAGAAAATCTCAACTCGCAACAGAATTAAAAATTTAGTGTTTGACATGGAAGAATTTATACAGAAATTCCCAGAACCGGTAACATTTTTTGAAAATGACGAAAGAAAAATGAATGAAAATTACGTTAAACATGTGGAAATTCAAATAAGAAATGATTTTCCTCAACTTAAAGGGAAATATATCAACAAAATATTAGACAAACATAAATCACATTACTCAACAACAAGAAAAGAAATACAAGCAGATCAACTTCAAACTAACGATGTTGTAGTCAATGATTATCTAGTCCATGCTATTGATCATTTGGAAGAAAAAGAAAAACTAATACAATTGAAGAGACAAGAGGCTAAAGATAATGGAGAAATATTTGAATGTGGTTGTTGCTTTGATGATGAATGTTTTTTCGAAGAAATGTCTGTCTGCGCTGATGGTCATTTGTTCTGTAAAGAATGTATTAGAAGGTCATCTGAGGTTGTTATCGGTGATAGTAAGACTAAATTCCCATGTCTCTTAGACACATGTAAAGAAGAGTTTCCATTATCAGTTCTGCAGCAAATTCTCCCAACAAATATGTTCTCTATATTACTACAACGATTACAAGAAGAGGAGATAAAACAAGCAGGAATTCCAGACCTTGTTAGCTGTCCATTTTAAAGATTATTTTCTTTTTATAGACTGTGTCAGGAACCGAATCATGTCCCATACCACTGTGATGAAGTTGAGAAACAAGGGGAGACAAATATGAGAACATTTATCGAGTCAAAGTTATCAGAGGCTATGTTACGGACATGTCACAGATGTAAGAAAAGATTTATGAAGGAGATTGGCTGTAATAAGATGACATGTGTATGTGGTGCTTCCATGTGTTATGTTTGTAGAGAACCAGATATTGATTATGATCATTTTAATGGAACCAAGTAA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
--	--	--	--	--

InterPro

InterPro term	Type	Description	Source
IPR013083	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR047544	Domain	E3 ubiquitin-protein ligase RNF216, RING finger, HC subclass	Interproscan
IPR051628	Family	Linear Ubiquitination-Associated E3 Ligases	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22770	UBIQUITIN CONJUGATING ENZYME 7 INTERACTING PROTEIN-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000151	Cellular Component	ubiquitin ligase complex	Interproscan
GO:0004842	Molecular Function	ubiquitin-protein transferase activity	Interproscan
GO:0043130	Molecular Function	ubiquitin binding	Interproscan
GO:0043161	Biological Process	proteasome-mediated ubiquitin-dependent protein catabolic process	Interproscan
GO:0071797	Cellular Component	LUBAC complex	Interproscan
GO:0097039	Biological Process	protein linear polyubiquitination	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K11976	RNF216, TRIAD3; E3 ubiquitin-protein ligase RNF216	EC:2.3.2.31	Ubiquitin system	ko04121	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_56904-3.5 global RNA-seq network