Gene detail

Detailed information of Bpl_scaf_56410-3.8 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_56410-3.8	ANAPHASE PROMOTING COMPLEX SUBUNIT 4 APC4	Bpl_scaf_56410	319784	367480	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Bpl_scaf_56410-3.8

GTTTATTTCAGAAAAAAACTGATGAAAAAATTTAGACACTGAATAAGGAAAGATGGCAGAATCTACAGCTTTTAGGCAAATGGATGAAAAACATGTATCTGTAGATGTGGAGTTGATGCTCTGGTCCCCAAAATTTGATCTGGTAGCTTTGTCAAATGTACAAGGGGAAGTTGTGTTGCACAGATGGTCATGGCAAAAGGTTTGGTCTGTTTCTCCACCTGCAGAAGATGTCAGAGTTACTTCCCTTGCATGGAGGCCTGATGGGAAAGTCCTAGCTGTTAGTTATTCCTGTGGTAAGATCAATTTGTATGACATTGAAAACACAGAGGTTTTACACACGATCGAGTTACAAGGGGAGATAACCAGTCTAACATGGATAAATCAAGTGATATCTGAAAACAATGTTTGGACACCAGAACCATACCAAGAGGATGACTTCAACCAGTTTTTACCTAAATTATTACCACTGTCTAAAAGTTATAGCCCTTTGAATACAAAAGGAACAACAGAAGAAAATGTTGAAGATAGTAAAAAGTTAAAAGACCAAAAAGAGTTAAATTTGCTGATAGCCAGCTGTGGAAAACAAGATGTCCACATGTTTGCTTATGGAGTGTACCCTATTGTTGTAATGAAAGTGGAGCAAACAGATTGGAAAATTGACAGAATACACACAGCTACAGTCTCTCAAGATCTGAAGTGTTTGGTGTTAATAGCTGAAGTTAGCAATGAAACAGACAAAGAAAACATGTTTAAGATATTGACATACAATACATCATTGATATCATCCAGAGACAAAGAATTAAGGATGTTGGCTTTAAAGTGTGGACAGATTGCTTCACTAATAGCTTATCTACAGTTAACAGTACAACAGATGTCAGAGTCCTGGGAGGATATCTTGATGGAAATGGATTCAAAACTTTTGAAATTTGCTCAGGAAAAAAAGGCCACTTGTAGTGGAACAGTTAGTAATGATTTCCTAGAATTACTCCTTTTTGGAATACCAAGTTTGGAACTGAAATCATTTTTGTTGCATGAATTAACAGACAAGGGTTTGAAGAAATTAGGAATCTCAATAGAAACCTCATATACAAATATACAGAAGCTTGTCATTAACCATTTACAAGTTGTGAGTCAGTCTTTACTCTATCACCTGAGTGAGTTACGAGGGATGTCACAATGGTATGACAGATTTGGTATATTAGGCATGTCTACAAAACACATACAAGAATCTGTTACAGCTGTGGGATCATTTGTACTGAAAACCAGTGAACTACAACAGGTTATTGATGATAGTATAAAGAATTTTAAAGCATTCTTTTGTTGGTTGTATGTTGCCATATTACAGCTTTCTGATGAAAAGGTACCAGCTGAACTCAGCAAGATGACTCAACATGATATTAACTTTGTTGCACAGTTCCTAACAGACAATTTTGATCATTTCTCTGTGGAGGAAGAAGATTCTATATCAGAACTAACATCAGAGAAAAGATCAGGCTTTAAACTGGAGAAAGTTGGTCAGTATTTAAAGAAAGAGGACCTTCATTATCCACCACACATATCTGTCAATCCTTGGATACAAGTAATGAGGTCTAGTCATCATATCAGAGAATCTGACATAGTATATCCTGTGAAAAGTTCAAGTTCACTTGTACAGCTACAGGAAATAGTAGAGGAAATCATTAAGTCTGCTCTAACACAACCCTCTATAGTTATTGGAGAATCGTTAAAATGTACAGAATCTTTAATTCTATTTAGTAAAGATAAAAGTGAAGAAAATTGCAGAATTAAATCTTGCCAGTTTACTTGTAATGAAAAGAAATGTATATATACAGTATTTACAACGAACTCGACTCCATGTGATCAATTTTATATTTTAAGACAACCAACATCATTTGGTTCAACACCACAAACAGAAGGAGTATCAGTAAAGATAGGAACACTAACACATGACGGTAACCATGACGACAGCTCTAATCACAGCCTAGAACTACGGTCACAAGAATCATAG

Protein

Gene family

Gene family	Subfamily
Ubiquitin Family	E3\|E3 adaptor Cullin RING\|CDC20

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12894	ANAPC4_WD40	Anaphase-promoting complex subunit 4 WD40 domain	Repeat	Interproscan
PF12896	ANAPC4	Anaphase-promoting complex, cyclosome, subunit 4	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR015943	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR024789	Family	Anaphase-promoting complex subunit 4	Interproscan
IPR024790	Domain	Anaphase-promoting complex subunit 4, long domain	Interproscan
IPR024977	Domain	Anaphase-promoting complex subunit 4-like, WD40 domain	Interproscan
IPR036322	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13260	ANAPHASE PROMOTING COMPLEX SUBUNIT 4 APC4	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005680	Cellular Component	anaphase-promoting complex	Interproscan
GO:0031145	Biological Process	anaphase-promoting complex-dependent catabolic process	Interproscan
GO:0034399	Cellular Component	nuclear periphery	Interproscan
GO:0070979	Biological Process	protein K11-linked ubiquitination	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K03351	APC4; anaphase-promoting complex subunit 4	-	Ubiquitin mediated proteolysis	ko04120	PMID: 28812709
			Cell cycle	ko04110	PMID: 28812709
			Cell cycle - yeast	ko04111	PMID: 28812709
			Meiosis - yeast	ko04113	PMID: 28812709
			Oocyte meiosis	ko04114	PMID: 28812709
			Progesterone-mediated oocyte maturation	ko04914	PMID: 28812709
			HTLV-I infection	ko05166	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_56410-3.8 global RNA-seq network