Gene detail

Detailed information of Bpl_scaf_56339-16.13 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_56339-16.13	WD REPEAT DOMAIN-RELATED	Bpl_scaf_56339	1587884	1619036	-

Gene Structure

More details in Jbrowse Sequence

CDS

Bpl_scaf_56339-16.13

ATGGATAAGGATTTGAAATGGACATTTAACACATTTGCAGATAGTAAGCTCAATTTAAAGAAAAACTGTATATGGGATTTATGCTTCAAACCAGATGGAAGTCAGCTGATTGTTGCTGCTGGAAACAGAGTCCTAGTTTATGACACCAATGATGGAACTTTGATCCAGCCACTGAAAGGTCACAAAGACACAGTTTATTGTGTTGCTTATGCCAGAGATGGAAAAAGATTTGCCTCTGGTTCTGCAGATAAAAGTGTTATTATTTGGACCAATAAACTTGAAGGAATTTTGAAATACACGCATAATGATGCTATTCAGTGTCTATCATATAACCCTGTAACACATCAGTTAGCCAGCTGTGCAGTTAGTGACTTTGGTCTATGGTCTCCTGAACAGAAGAATGTATCCAAACATAAAGTAAACAGTCGTATAACATGCTGTAGTTGGACCAATGATGGCCAATACTTAGCTCTTGGACTTTATAATGGTCTTATCAGTATTAGAAATAAGGGTGGTGAAGAAAAGGTTAAGATAGAAAGACCATATGCTGCAGGTAGTCCTGTATGGGCTTTGGAATGGAATCCAAGCAGGGATGAACCATATGATGTTTTATCTGTGGCAGACTGGGGACAGAGATTGTCACTTTACCAGCTCTCTGGAAAACAGATGGGAAAAGACAGACCACTTGGTTATGACCCTTGTACTCTCGGTTGGTTTTCTAAAGGAGAATATATAGTTGTTGGAGGTTCTAATAAACAATGTTGTCTTCATACAAGAGATGGTGTCAAGTTGGGTGTTATCGGTGAGCAGGAGTCATGGGTTTGGTGTGCAGCAGTCAAACCAGATTCTAACTATGTGGCTGTTGGTTGTCAGGACGGTACTATTGCCTACTATCAGTTGATATTTAGTACAGTACATGGTCTGTATAAAGACAGATATGCTTACAGAGATAATATGACAGATGTAATAATACAACATTTAATTACAGATCAGAAAGTAAGAATTAAATGCCGTGATTTGGTGAAGAAAATAGCTATTTATAGACACAGACTGGCAGTCCAGTTGCCTGACAAGATAGTTATCTATGAGCTGTATTCAGATGACTCTGCTGACATGCACTATAAAGTTAAAGAAAAAATTAACAGGAAATTTGAATGTAATCTACTAGTGGTATGTTCCTTGAACATCATTCTATGTCAGGATAAGCGCTTGCAGTGTTACTCATTTCAAGGTGTGAAGGAACGTGAATGGATGATGGAATCTTTGATAAGATATATCAAGGTTATTGGTGGGCCATCAGGTCGTGAAGGTCTCCTAGTGGGACTTAAGAATGGACAGATCATGAAGATATTTGTTGACAATGCCTTTCCTATTATGTTACTAAAACAAAGTACGTCTGTCAGATGCTTGGACATGAGTTCTTCTCGTACCAAATTAGCTGTCGTTGATGAACACAATACTTGTCTAGTGTATGACATCAATACTAAAGATTTACTTTTCCAGGAACCCAATGCAAACAGTGTGGCATGGAATACTCACTATGAAGATATGTTGTGTTTCTCAGGGAATGGATTATTGAATATCAAAGCTAGTAACTTTCCTGTACATCAACAAAAACTACAGGGTTTTGTTGTTGGGTTCAGTGGATCTAAGATTTTCTGTTTACATGTCTACTCAATGTCATCAGTAGATGTACCACAATCTGCACCAATGTACCAGTACTTAGAGAAGAAACATTTCAAAGATGCTTACAAGATCGCTTGTTTAGGTGTAACAGAAGGAGATTGGGAGGCCTTAGCCCATGAAGCATTAGAAGGATTGGACTTTGATACAGCAAAGAAGGCATTTATTAGAATAAGAGATCTGAGATACCTTGAACTTATACACAGTATAGAGGAGAGGAAAAAGAGGGGAGAGAATGACAATATGGTATTTTTGGCTGATGTTTACAGTTACCAAACCAAGTTTCATGAAGGAGCCAAACTGTACAAGAAGGCTGGACAGGAACAGAGGGCTATGAACATGTATACAGATCTCAGAATGTTTGATTATGCCAAGGAATACATTGGCTCTGGAGATCCTTTAGACAAAAAAATGTTGATTACAAAACAAGCTGATTGGGCCAAGAGTAGTAATGAACCTAAAGCAGCTGCTGAAATGTACATCTCTGCTGGAGAATTCTGTAAAGCTATTGATATCATTGGAGATCATGGATGGGGAGATATGTTGATAGATTTGGCAAGGAAACTGGACAAGGCAGACAGAGAAGCTTTATCAAGGGCTGCAATGCACCTGACAAAAATAGAACAGTACCCATATGCAGCAGAGGTGTACAGTAAAATGGGAGATATTAAATCACTTATAGCACTTCATGTGGAGGCCAAACATTGGGAGGATGCTTTTACATTGGTTGAAAAACACACAGAATATAAAGAAGAAGTATATGTACCTTATGCTCAATGGCTGGCAGAAAATGACAAATTTGAAGAGGCACAACAAGCATTCCACAAAGCAGGACTTCAAACAGAGGCAGTTAAAGTATTAGAACAACTTACCCACAATGCTGTATTAGAGAGTCGGTTCAATGATGCTGGGTACTACTTCTGGAAACTTTCAATACAGTGCTTAGACATTGCAAAAGATGAACCAGACAAAAGAGAAGAAATGTTAGAAAAATTCCATGACTACCAGAGAAGAGGTGATATGTACTTTGCCTACCATTCAATACAACGCTATACTGATGAACCATTTACATCTCATTTACCAGAAGCTTTGTTTAACATATCTAGATATCTGTTACACATGATGCAAGGAGGAATTCCTTATGGTATATCTAAAGTTGGTACATTATATGCTCTGGCAAAACAGAGTAAGAATCTGAATGGCTTTAAGCTAGCAAGGTATGCCTATGAGAAGCTACATACTCTGAGAATACCAAACAGATTCCAGGAAGCTGTAGATCTAGGAAGTGTTATTATTAGATCAAAACCATTCCAGGATGCAGAGGAACTGTTACCTATGTGCTATCGATGTTCAACTACGAATCCATTATTAAACAATGGTGGTAACTTCTGTATAAACTGTAGACAACCTTTTGTACATTCATTTGTGTCATTTGAAGTATTACCATTGGTTGAGTTTGTATTAGAAGATGGGATAACAGATGAAGAAGCTGTTCAAGTGTTAGACTTGTCAATACCAAAACAGAAGAAAGAGGACAAGAAGTGGCATGAAAGTCGTATGGGGCAGGCTCAAACATTACGACTTGGTGATGAACCAGAAGAAGAAGAAGATGATCCATTTACAGCTAAATTACATTCATTTGAGCAAGGAGGAACAGAATTTAAGCCTGTGAGAGTTACCAGATCTGTACTACAGTCTTTATCTAGATCTGAAGTTTATGTACTAAAATGGCCTAAACCACTTAGATATCAATTCTTTAAGTCTCTACTACCTGATGTTACTATTACACAGTGTCCATTTTGTCATAAGTTGTTCCACACAGATGACTTTGAACTACAGTATTTACAGAAAGGCCATTGTCCATTCTGTAGGAATTCACAAGAAGAATAA

Transcript

Bpl_scaf_56339-16.13

Protein

Gene family

Gene family	Subfamily
Ubiquitin Family	UBD\|Other\|Beta-prp
Ubiquitin Family	E3\|E3 adaptor Cullin RING\|CDC20
Ubiquitin Family	E3\|E3 adaptor Cullin RING\|DWD

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00400	WD40	WD domain, G-beta repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001680	Repeat	WD40 repeat	Interproscan
IPR015943	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR036322	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR039857	Family	Intraflagellar transport protein 122/121 homolog	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12764	WD REPEAT DOMAIN-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0030991	Cellular Component	intraciliary transport particle A	Interproscan
GO:0035721	Biological Process	intraciliary retrograde transport	Interproscan
GO:0060271	Biological Process	cilium assembly	Interproscan
GO:0061512	Biological Process	protein localization to cilium	Interproscan
GO:0097730	Cellular Component	non-motile cilium	Interproscan
GO:1905515	Biological Process	non-motile cilium assembly	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K19656	IFT122; intraflagellar transport protein 122	-	Cilium and associated proteins	ko03037	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_56339-16.13 global RNA-seq network