Gene detail

Detailed information of Bpl_scaf_56254-2.3 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_56254-2.3	ANTIGEN BSP, PUTATIVE-RELATED	Bpl_scaf_56254	253135	256692	+

Gene Structure

More details in Jbrowse Sequence

CDS

Bpl_scaf_56254-2.3

ATGGATTATCAATTTTTCTGTTTGTTGTTGGTGTTTATTAATGACACAGTAACATCATGTCCAACACAAGAATGTAAAACTCGAACAACGAGGCTACCTCCAATGAATATATTAAATAGAAATGGAAAGAGCTTACCAACATCTGCAATATCATTGGAGGTTAAGGTACCAGAAAATATGTCCGAGGGCTGTTTTGTAAACACGACAAATTACCTAAGCCAATTTAACATCAACCAGGACAACGAAACTGTGTTTGTGTTCTCCTTTAATTGTCACAAAGTGCATCCTATTTTCATTACAGAATATGAAGGAGAATTTGCACAAAATGCGTTTGGTTATTTACAAGTTCGATATTGTATTATTGGTCGCTATGAAATCCAACAATTATTCCATGTGACTAACATGCTTGTTTTGACGATGTTTGAAAGTGTATTCGATCCACATAAACCGGCATGTTTACACTACTCAGAGAACACTTCAGACTGTTCTGGGTTGGGGAACATGTCCTCTCTGGCTTTTACATTACCACCGAATTCTACACATTCTAACCTTATAGACTTATTTAATTGTACTACTCAAGTCTTTATGACATCAGAATTGTCTTTATCATTACAAGGGTGGACGGAATTCCCACCTTATCTACAGGATAAATTTCCAAATGTACAAACGTTAGAATTAGAAAAGAATAATTTAACAGTACCTCCTAATTTTCCATGGACGGACGAGGTAGGGTACATAGGACATAATTTATCCAGATCTTTATATTTTGCTCATCATTATACGTCACTATTTCACGTTGTTCTTCCTGATGATGTTTTTAGACGATACCTCAATTTAAACTTTAATCAAATTAATGATCTTAGAAAGTTCGAGTTCAGAGGTCAAATGGATATGATTTCAATACAACACAATCATCTGAAGTATATCAATGAATATACTTTCACAAAAATAAAAGGATTGCAAAGTTTAGATTTGAGTGAGAATTCTTTGGTTAATATTCCAATGGGTACTTTCAGTGGATTAACAGATTTAAGGAATCTTAATATACGAAACAATACATTGACACATTTACACAAGGATCTTTTTAGTGATTTAGAGAAACTGATCAAATTAGATTTATCTTTAAACAAATTAAAGTTTCTGCCTCATGATGTATTCTCTAGACTAGGAAAACTGAGTGTGGTGAATCTTGAATTTAATCAGTTGACTGTTGTTCCGACAGAATCGTTTCCAGTTCTTAGTCTGAATTTACAGGAAGTACGCCTGAGTTTTAATCCTATCTCTACATTTCCGGTAGTTGTGTTGTATTTAAGATATTTGAAGTTAGCAGATTTAAGATATACTGATATATCTATGGACAATGTCACTGCTTTACTAACTAATATAAGCTTTACTTACTTAGCAGAAAGCGTTGTGGATTCGGCAGCCTCAAACAATATCAATCTGGAGAACAGAGATTCACAAAAGAGGTTGAGAAAAATAGATCTGACTGGTAGTAAAGTTACCAGGATTGGTTATAATGGCGGGAAATTTGATGGCATCTTTGAAATAATTCTACAATATTTTAAATTTGTTCTTGACAAGAATGATTTACTATGTGACTGCAATATTATTCCATTTTCAAAATGGATGGACTCGAAGGTCAAAGAGAATGTATTCTCTGGAAATGAGTATTTCTTTAATGATTGGAAATGTAAAAGGCCTGTAGAGTTGAGAAAGAGACCGATGCTGAAAATAGCAGAAAAGGAAACGTACTGTGAGGTGCAGGTCCAGTTGTGTCCTCACAAATGCCAATGTTATCAGTGGTCTGTTACAAATATAACAATAATAGATTGTAGGAACATAAATCTAACTACCTTACCTGAACGATTACCTGCCGGACCTCTAGATTTATGGTTTCAAAATAATAGTATTACAGAGTTATCAGTAATGGAATATCTAGCACGCAGTCGTGACATTCTCTTCAGTAACAACAAGATAAATGACATCAGTGACATAGTTATCAACAATATGACAGATCTAAGAAAACTTTATCTAGATTCTAACTACTTGACGAGCTTACCTAAATCTGTACAGTACTTATCAAATGTACACATTTATATTAAAAATAACCCATTCCTGTGTGACTGTAAAACATTATGGATGAAGTCGTGGATTCTCAATTATCAACAGAGTATATTGGACTGGATAGATGTTACATGTGCCTATGGAAATGAGGAAGGGAGACAATTCATCAGTGTAGAGGATGATAAATTTGTGTGTTTAGAAGCATTCGATACAGTTAAGCACGTGATTGCTCCCAGTGTAGCATCGTCAGTCTGTATCGTGTTCTTCATTGTTATCATGGGTTCGTGTTTCATCTTTAGGTTAGAATTGAAAGTTCTTCTTTTCATCTATTTTGGCTTTCATCCATTCGATAAAGACGAAACAGATGAAGACGAATTGGACTGTGTTATTATTCATTCTAAGCTATTAACTGATTGGGTTCTTGAAAATATTGTAGCTCCTTTAGAAGCAGACGATAAAGCTTACGTCGTTTGTGAAATAGCTCGAGACTTTGTAGTTGGGTTTTCTTACCAAGAAAATATTTGCAGCATTGTTAGAAGAAGTAAAAGAATGATACTAATCCTTTCAGAAGAATTATTGGTTGATTCGGATATTGTAAAAATTGCCTGGAACGAGGCTCAGGAAAAAATAAAAGACATGCGTACAAATTATGCAATTGTTGTGTGTCACGAGATTCCACTGAAAATGATAAATAACAAAGATTTGAAAAGATATATAAAGAGAGGCAGATACATCAGTACGCATGACAAATTGTTTATAGAGAAAATCTTATATCGTATGCCACAGTTTGACAAAATTCAAAATAGAAAGCTTCCAAATTTGAGACAAATTGTTTTGGAAATGTATGAAAACGACATTAATATGGATACGGAAGACGTGCACGCTTTTCTAACCTACTCAGAAAGAGATATTCATATAGCTCTAAAAACATTGACACCAATTCTTCAAAAACAAAACTACATCTTGCATGTACCAGATAGAGATTTTATACCTGGTGCATCGAAAGAAGAAAACATTTTGAAAGCTATTGAAACTTGTAGACATACTATTTTCCTGCTATCTGGACCATATTTGGAGGACGAATGGTCCTTGTTTACATTTCGTTCTGCTAGTGAGAAATCTATCAGACAAAGATGTAACCATATGATTGTTGTTGTCATTGACGACCACGATGGTGCTTTAATGGACGAGGAAGTAAAATATTATCTAAAAACACACGTGACGCTTCATGTTACAGATCAGTGGTTTTGGGAGAAATTAACAAAAGCATTACCAAATACTCAGGATAATAATGAAAGATTTGAAATAATTAATAACAAAATAAATGATCAAATTCATAAACAAAACTCTATAAAAAATATGCAAATCCAGGATTTAAAAAATGATATTGAAAATGGGGTACAATGTGAACAACTGCAACATAGAAATGAAGAGAACTTTAATAACAATGAAGAAAGACAGATATTTAGAGTGGCAGCTACACAACTTTAG

Transcript

Bpl_scaf_56254-2.3

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01582	TIR	TIR domain	Family	Interproscan
PF13855	LRR_8	Leucine rich repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000157	Domain	Toll/interleukin-1 receptor homology (TIR) domain	Interproscan
IPR000483	Domain	Cysteine-rich flanking region, C-terminal	Interproscan
IPR001611	Repeat	Leucine-rich repeat	Interproscan
IPR003591	Repeat	Leucine-rich repeat, typical subtype	Interproscan
IPR032675	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan
IPR035897	Homologous_superfamily	Toll/interleukin-1 receptor homology (TIR) domain superfamily	Interproscan
IPR050541	Family	Leucine-rich repeat and transmembrane domain-containing protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24369	ANTIGEN BSP, PUTATIVE-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005886	Cellular Component	plasma membrane	Interproscan
GO:0007165	Biological Process	signal transduction	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K18809	TL; protein toll	-	Toll and Imd signaling pathway	ko04624	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_56254-2.3 global RNA-seq network