Gene detail

Detailed information of Bpl_scaf_56162-5.8 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_56162-5.8	SLIT-ROBO RHO GTPASE ACTIVATING PROTEIN	Bpl_scaf_56162	534758	585106	-

Gene Structure

More details in Jbrowse Sequence

CDS

Bpl_scaf_56162-5.8

ATGAAAAACTCATTTTCCATTAATTTACAAAAAACTGCAGATATAAGAAATCAGCTGAATGAACAATTAAGATGTCTAGAAAATCGTCTCGATATTCAGGTGGCCATGGTTCAAGAAATACAGGAATTTTTCAGACGAAAAGCAGAGGTAGAAATAGAATATTCAAAAAATTTGGAAAGATTGGTCAAAAGTACAAAGTTACGTCATCGTCAAGAAAAACAAAAACGTGAACATTGGTCTTTATTTTCCACTTTTACCTGCTGGCAACAGCTACTGGATATAACAAAGAAGGAAAGCAAAGATCATGGCTTATTAGGAGACATTTGTAGCAATCAATTGGCTCCACGACTCTGCAATATCATCGATAATTCCAGAAGAATATTTAATAGATGTAAAGGTGTTGGTGAAGAGAGCCATGAAGAGATAATGAAAGCATTGACTGAGTTACAAAGTGCTATGAAAACATACCATGCTTACCAGTCTGATAGTAAGTCAGCTGAAGCCAAACTGAAAGCTGTAGAAACACAGAAAGCTAAGCTAGAACAACAGTTAGCTGGCAAAAACTTAACCAGCAACAGAAAACTCAAGTCATTTTACAGACAAACAGAAAAGAGGGAAACCAAATACATGGACAACAAGAAAAAAGCATTGAAGGCTAGAAATGATTATTTATTAGGAATCGAGAGTGCCAACGCATCCATCAACAGATATTTCGCTGATGATTGCTCTGATCTTATGGATTGTATGGACTTTGGCTACCATAACTCTGTTAGATGTTCTATGTTAATGTACCAGTCTTGTCAGAAGAATATTGCTAAAGCACACACGAATGCCTGTGAAGTTGTCAATAAATGTGTTGGCGATTTGGATCCACAGTCAGATAAACAAAGATTTATAGAACTACACAATGCTGCTTTTATGCTTCCTAAAAAGTTTGAATTTCAGCCATATCGAGGTGATGAGGTTCACCAAATTAGTGCTCAGAAATCAGTCCAGGATGATATATTACAACGATACAAAGCTATTGGTGACAGATTACGTGATATACGTCTAGAAAATGACGAGGTTTGGAAAACTTTAGAAGAAACAGAAAAATCATTGAACGATAAGATTAATTTAAAGGACTATGATGTTTCCAGTTTCTTCTTAGAAGAAAATCATCCACCAAAGTCACCACACGAAGCTGCCAAAAGAAGGGGGGATAGAATAGAATTAGAGGGGTTTTATTTAGAGAAATTCCATAGATATACATTAAGTTGCAATCAAATCGCCAGACTCCATGCCAAATATAGTGCAATACAGAAAGTTGTAGGTGATAACTTATCTAGCTCATCTGGAAATAGACCACCATCACTTCCACCAAAGACGAGAAAAACTGTAAGAAAAATTGGTCGATCACAAATGGTTGGACAGCCAAAATTATTTGGTGGAAGTTTAGAGGAATATATTGAGGCAACCAACAGTGATATTCCTCTGGTCGTTAGAAGTTGTATTAGAGCTATTAATCTTTATGGAATGCATCACCAAGGGATCTTCCGTATATCTGGTGCTCAAGTAGAAATCAATGAATTCAAAGCAGAATTTGAAAAAGGAATTGATCCACTGGTGGATGTAGACCCTAGTGATATCAACTCTGTTGCTGGTGTACTTAAATTATACTTTAGAGAGTTACGAGAACCATTGTTTCCATTGCATTTGTTTGATGAACTCATAGCTTGTAGTAAATTAGAAGAGCTACAGAGATTAGAAAAAGTTAAAGAATTACTGTCAACACTGTCTAGAAGTAAAATTATTGTTATGAGATATTTGTTTTCATTCCTTAATCATTTATCAGAATACTCAGATGAAAATATGATGGATGCCTATAACTTAGCCATTTGTTTTGGACCAACACTTCTCCCTATTCCTCATGATCGGGACCAGGTTTCTTACCAAAGTAATGTTCATGAAGTTGTAAAGACTGTTATCGTCCATCAAGAAGATTTATTTTCTGGGGATGATAGTGGAACGATGTATGAGAAATGTATCTTGGAAGACAGGGATGCAGCTGATGATGATACAGAAGGTGAAGCTTCATCTTTACACAGTGAGGATGAAGAAGATGATGACTCAGAGATCTTTGAAGCCATATCATTGTATGATTTTGATGGAAGAACTGATAGAGAATTGTCCTTTAAGAAAGGCCGATCGTTATTATTGTACAACAAAGTGTCCACAGACTGGTGGGAAGGTGTATGTGAAGGAAAGGAAGAGAGAACGAGTACATCGTCAAGTATAGCAAAGAGTGTAAAATCAGAAGATTTAAAACCTATGGAAAGATCATTTATACAGGCGGCTCCTCCTACACCAAAAGAAAGCAGTCCATCTATAGCTTCAACTTCATCTAGTTCCTCTTCACAAACTTCTAAGTCAGTAGAATCAAAAGACAGTTCATTATGTAGTGATTCTGTTTCATTTACTACCGATATTCCTCCTTCAACTCCGACTGAAAAAACGGAATCAAACATTGAAACGAATCAGTCTGTTATGACTGTTTCTGTTTCTGCACTGGACAAAAATGATCCAGTAATTTTACCTAAAGAAATCAGTACTACGGAGAAAGTTGTAACAACGCAAGAAAAAATAACTGAAGAACTGACTGCAGATATTGACAGTGCATTGGCTGAAGTTGTTTCTGGTTTACAGATGTTAGAAATGCAACAGTTAAGTGATAAACGTATGAGTCTACCAAATGTCAAGCAAAAAGCATCAGCTAAACACACACCTGACTTAGTGCTAGATTTACCAGAGGGATCAAATTCTTCACCATCGGGTGAAGGAAGTGAACCAGACAGTCCTACAAGTACTGCTGATACCTTTGCTAAATCAAACCAAGGAACTCTCAAAAAGGCTAGTTCAATGCCTAGGAATATGACTGTTGTTGATCGATTCTATGGACAATCTGGACAGGATGTGCTGTTAGAAACTAGTTTCATGTCCCAGAAACAAATGTTATCTACGTTCCACGTAAAATCACAACAGGCACGAACAAAATTTGTCCCGGAAACTAAAACACCTGAAATTATGTCAACAAGTCTTACATCAATGTCATCTTCAGCGGTGGCAGTTCCTCCAGTGACATTGCCATCATCTTTCTCAAATATATCTACTGCAAACCCACCTCCTATTGCAGAAAAACCAAAACTACCGCCGAAGAATAGGCCACCATTAATGAAGAAACCATCAATTCCAGATTCTCATAGAAAATGTTCCCTTCCATCATCAGTGACACAGAACCCTGAAGGCTCCGAACCTCAATAA

Transcript

Bpl_scaf_56162-5.8

ATATTTAAAAATATATTGCTGGAAAATCTATAAATGAAAAACTCATTTTCCATTAATTTACAAAAAACTGCAGATATAAGAAATCAGCTGAATGAACAATTAAGATGTCTAGAAAATCGTCTCGATATTCAGGTGGCCATGGTTCAAGAAATACAGGAATTTTTCAGACGAAAAGCAGAGGTAGAAATAGAATATTCAAAAAATTTGGAAAGATTGGTCAAAAGTACAAAGTTACGTCATCGTCAAGAAAAACAAAAACGTGAACATTGGTCTTTATTTTCCACTTTTACCTGCTGGCAACAGCTACTGGATATAACAAAGAAGGAAAGCAAAGATCATGGCTTATTAGGAGACATTTGTAGCAATCAATTGGCTCCACGACTCTGCAATATCATCGATAATTCCAGAAGAATATTTAATAGATGTAAAGGTGTTGGTGAAGAGAGCCATGAAGAGATAATGAAAGCATTGACTGAGTTACAAAGTGCTATGAAAACATACCATGCTTACCAGTCTGATAGTAAGTCAGCTGAAGCCAAACTGAAAGCTGTAGAAACACAGAAAGCTAAGCTAGAACAACAGTTAGCTGGCAAAAACTTAACCAGCAACAGAAAACTCAAGTCATTTTACAGACAAACAGAAAAGAGGGAAACCAAATACATGGACAACAAGAAAAAAGCATTGAAGGCTAGAAATGATTATTTATTAGGAATCGAGAGTGCCAACGCATCCATCAACAGATATTTCGCTGATGATTGCTCTGATCTTATGGATTGTATGGACTTTGGCTACCATAACTCTGTTAGATGTTCTATGTTAATGTACCAGTCTTGTCAGAAGAATATTGCTAAAGCACACACGAATGCCTGTGAAGTTGTCAATAAATGTGTTGGCGATTTGGATCCACAGTCAGATAAACAAAGATTTATAGAACTACACAATGCTGCTTTTATGCTTCCTAAAAAGTTTGAATTTCAGCCATATCGAGGTGATGAGGTTCACCAAATTAGTGCTCAGAAATCAGTCCAGGATGATATATTACAACGATACAAAGCTATTGGTGACAGATTACGTGATATACGTCTAGAAAATGACGAGGTTTGGAAAACTTTAGAAGAAACAGAAAAATCATTGAACGATAAGATTAATTTAAAGGACTATGATGTTTCCAGTTTCTTCTTAGAAGAAAATCATCCACCAAAGTCACCACACGAAGCTGCCAAAAGAAGGGGGGATAGAATAGAATTAGAGGGGTTTTATTTAGAGAAATTCCATAGATATACATTAAGTTGCAATCAAATCGCCAGACTCCATGCCAAATATAGTGCAATACAGAAAGTTGTAGGTGATAACTTATCTAGCTCATCTGGAAATAGACCACCATCACTTCCACCAAAGACGAGAAAAACTGTAAGAAAAATTGGTCGATCACAAATGGTTGGACAGCCAAAATTATTTGGTGGAAGTTTAGAGGAATATATTGAGGCAACCAACAGTGATATTCCTCTGGTCGTTAGAAGTTGTATTAGAGCTATTAATCTTTATGGAATGCATCACCAAGGGATCTTCCGTATATCTGGTGCTCAAGTAGAAATCAATGAATTCAAAGCAGAATTTGAAAAAGGAATTGATCCACTGGTGGATGTAGACCCTAGTGATATCAACTCTGTTGCTGGTGTACTTAAATTATACTTTAGAGAGTTACGAGAACCATTGTTTCCATTGCATTTGTTTGATGAACTCATAGCTTGTAGTAAATTAGAAGAGCTACAGAGATTAGAAAAAGTTAAAGAATTACTGTCAACACTGTCTAGAAGTAAAATTATTGTTATGAGATATTTGTTTTCATTCCTTAATCATTTATCAGAATACTCAGATGAAAATATGATGGATGCCTATAACTTAGCCATTTGTTTTGGACCAACACTTCTCCCTATTCCTCATGATCGGGACCAGGTTTCTTACCAAAGTAATGTTCATGAAGTTGTAAAGACTGTTATCGTCCATCAAGAAGATTTATTTTCTGGGGATGATAGTGGAACGATGTATGAGAAATGTATCTTGGAAGACAGGGATGCAGCTGATGATGATACAGAAGGTGAAGCTTCATCTTTACACAGTGAGGATGAAGAAGATGATGACTCAGAGATCTTTGAAGCCATATCATTGTATGATTTTGATGGAAGAACTGATAGAGAATTGTCCTTTAAGAAAGGCCGATCGTTATTATTGTACAACAAAGTGTCCACAGACTGGTGGGAAGGTGTATGTGAAGGAAAGGAAGAGAGAACGAGTACATCGTCAAGTATAGCAAAGAGTGTAAAATCAGAAGATTTAAAACCTATGGAAAGATCATTTATACAGGCGGCTCCTCCTACACCAAAAGAAAGCAGTCCATCTATAGCTTCAACTTCATCTAGTTCCTCTTCACAAACTTCTAAGTCAGTAGAATCAAAAGACAGTTCATTATGTAGTGATTCTGTTTCATTTACTACCGATATTCCTCCTTCAACTCCGACTGAAAAAACGGAATCAAACATTGAAACGAATCAGTCTGTTATGACTGTTTCTGTTTCTGCACTGGACAAAAATGATCCAGTAATTTTACCTAAAGAAATCAGTACTACGGAGAAAGTTGTAACAACGCAAGAAAAAATAACTGAAGAACTGACTGCAGATATTGACAGTGCATTGGCTGAAGTTGTTTCTGGTTTACAGATGTTAGAAATGCAACAGTTAAGTGATAAACGTATGAGTCTACCAAATGTCAAGCAAAAAGCATCAGCTAAACACACACCTGACTTAGTGCTAGATTTACCAGAGGGATCAAATTCTTCACCATCGGGTGAAGGAAGTGAACCAGACAGTCCTACAAGTACTGCTGATACCTTTGCTAAATCAAACCAAGGAACTCTCAAAAAGGCTAGTTCAATGCCTAGGAATATGACTGTTGTTGATCGATTCTATGGACAATCTGGACAGGATGTGCTGTTAGAAACTAGTTTCATGTCCCAGAAACAAATGTTATCTACGTTCCACGTAAAATCACAACAGGCACGAACAAAATTTGTCCCGGAAACTAAAACACCTGAAATTATGTCAACAAGTCTTACATCAATGTCATCTTCAGCGGTGGCAGTTCCTCCAGTGACATTGCCATCATCTTTCTCAAATATATCTACTGCAAACCCACCTCCTATTGCAGAAAAACCAAAACTACCGCCGAAGAATAGGCCACCATTAATGAAGAAACCATCAATTCCAGATTCTCATAGAAAATGTTCCCTTCCATCATCAGTGACACAGAACCCTGAAGGCTCCGAACCTCAATAA

Protein

Gene family

Gene family	Subfamily
Ubiquitin Family	UBD\|Other\|SH3

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00018	SH3_1	SH3 domain	Domain	Interproscan
PF00611	FCH	Fes/CIP4, and EFC/F-BAR homology domain	Family	Interproscan
PF00620	RhoGAP	RhoGAP domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000198	Domain	Rho GTPase-activating protein domain	Interproscan
IPR001060	Domain	FCH domain	Interproscan
IPR001452	Domain	SH3 domain	Interproscan
IPR008936	Homologous_superfamily	Rho GTPase activation protein	Interproscan
IPR027267	Homologous_superfamily	AH/BAR domain superfamily	Interproscan
IPR031160	Domain	F-BAR domain	Interproscan
IPR036028	Homologous_superfamily	SH3-like domain superfamily	Interproscan
IPR051627	Family	SLIT-ROBO Rho GTPase-activating	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14166	SLIT-ROBO RHO GTPASE ACTIVATING PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0007165	Biological Process	signal transduction	Interproscan
GO:0030336	Biological Process	negative regulation of cell migration	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K07526	SRGAP; SLIT-ROBO Rho GTPase activating protein	-	Axon guidance	ko04360	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_56162-5.8 global RNA-seq network