Gene detail

Detailed information of Bpl_scaf_56065-0.43 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_56065-0.43	WD REPEAT AND HMG-BOX DNA BINDING PROTEIN	Bpl_scaf_56065	35719	55413	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Bpl_scaf_56065-0.43

GCAGTTACCATTGGTGAAGATTGGGTAGCCATAGCAACATACAGCAGAAATGTGAGGTTGTTTACATTAGCTGGGGTTCAGAAGGGGATGTTTAGTATACCTGGTCCTGTGGTTTGTCTGGCAGCTCATACTAATCAGTTGATGGTTGTATATCATAGAGGTCTAGCCATTCCTGGAGATCAGTGTTTAGGAGCAATAATGGTGACAGTTGATGGTAAACAACGTAACATCCTGAGTGGAGAACCTTTACCTTTATCACCCAAGTCAACTCTAACATGGATGGGGTTTTCAGCAGAAGGAACACCATTTTGTATGGACTCTGTAGGAATTATAAGGATGTTTAACAGGAAATTTGGACCTAACTGGATACAGGTTGCTAATACAAAATCACATACCAAAGGAAAATCTGATCACTACTGGATTGTGGGTGTCAATGAAAATCCACAGCAACTCAGGTGTATCCCATGTAAAGGATCAAGATACCCTCCTACTTTACCTCGTCCTGCTGTTACTGTACTACAGTTTCAAGTACCTCTTTGTGAAATGCATACAGAGAAAAGTCAATATGAGGAAACCTTCTTACGAACACACTTATTTAGCAACCACTTCGACCACTGGACTTCTCAAGGTTTTGAATTTGATACAAGTATGAAACAAGAAGCCTTAAAACCATCACAGGAAGCACTGATGAAACTTTTTGCTTTGTCAGCCAGGTCTGAAAGAGAGTTTAGAGCTTTAGAAGTGTGTGAAATGATGCCTGATGAACATACTCTACAGTTAGCCATTAAATATGCCAGTCGTCTGAAGCATATACAGCTGGCTGAGAGAATCAGTGAGTTGGCCATGAGGAGATCAGAGGAGGCTCAACAAGAGATGGAGGAGGAAGAGGAAGATGAACCAGAAGATTTTAGAACAGAAATTATCAACCAACACAATCATGTGGATACAGAATGGTCTCATACTAATGGTGATACACAAGATGTTGATAATGAAGAAGAACCTACAATTTCAGGTCCAATGTTGAATTTTAAGCAAAAAGAGGAAAAACCTGCCAGACCCATTTATTTATCACAAGGGCGATCAAATCCCTTCAAGGTAACATCCTCTCAACAGAAGACAAGTGGAGGCAGTACAAGAGGTACACAGGTGTTTGATTCTATGAGTAAAAAGAAACCTGAGAAACAACCTCCATCACAAGTTATTCTGAAAAATTCTAAACCTGTACTGAAAAAGAGTTCTTCATCACAGCAGAAGTTATTTTCAGCAAAGAAAGCAGAAAAAGAGGAGACAGTCAAAACCCCAACAACACCAAGTACAAAAACACCGTCAGCTTTTGATTTGTGGTATGAGGATAACAAGAGTGAATTATTAGACGAGTTCCCAGACCTGTCTGATGAAGACTTAACACAGATTGCTGCTGAAAGATTTAGAAAATTATCCAAAGAACAGAGACAGGAATGGTTACAGAAAGCAAAACAACTGAAGTCAGAGAATACAGAAAATACAGAGACAATGGAAAGTAAGAAGAGAAAAAGAGATGAAGTTACAGACTCTGTTTCTAAAAAGAAAAAGGAGATTTCTAAACCTTTGTCATCAAACACTAACTCTAAACTGGCTGGATTTACTTTTAGTAAAGACTGATAGTTTGTCCAAAATAAAGGGAAGAGAAAATATTGATATGACATTGTTTAACTAAGAAAATGTGCTATGATAGAGAATATTTTAAGAATTTTCATTTCTGTATGTTAATGAAAGCAAAGTCTTATGAGGTCATCCTTAAACAAATACTGTTTGACTGTTAGTTGTATTATGGTAACCAAACTTACATTGTTTGAGATAAGTAAGTATATAGGTATATTAAACTTTCAGTCAGGAATTCTTCAGTATTTCATGACATTATGCATCTCCTATTTTATTTTGTAATCTGAATTTTTTTTGGGGTTTCCAATATCAAACAACGGACTTTGCTATTTCTGTTTTATGAGAAGGTAGTTATTCCTCGGCAGGAATTCCTCTGAAAGTTCTTAATGGATTTCATTGAAATTTTAATAGTAATTGTACTTTTTGATCCAAATGATTTTTGAGGTTTCCCATATCAAACAATGGACTGTGGTGTTTCAGTCATATTCTTTGTTGCAGTATGTATGCAGAAACATTTGAAAGGATGACCTAAAAGTCACCTTGATGGAGAGTGTGTATGTGTGGTTCACAGGTAACACTATCTATCTTGTTATTAACATGTACATGACAGATTGATTCAATCATACTGTTATACTGTTATACTACCAAGTGGTTTAACTTATTGTTTATTATATATATATATATATACAGTGGAATCTGTGCAATCCGACATCCTGTGACATCCGACACAACATTATGGTCCCAAAGTATTTCTATTAACTAAAATAAAACCTGAGTATTCCGACATCCTGTACAATCCAACACATTTCCATGATCCCTTGGTGTGTCGGATGAGACAGGTTCTACTGTATATATCTTTTTTATTGAAAAAAATGTATTTTTATTGATATTATTTATGTCAATGTGTCTTAC

Protein

Gene family

Gene family	Subfamily
Transcription Factors Family	HMG

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00505	HMG_box	HMG (high mobility group) box	Domain	Interproscan
PF12341	Mcl1_mid	Minichromosome loss protein, Mcl1, middle region	Repeat	Interproscan
PF20946	Ctf4_C	DNA polymerase alpha-binding protein Ctf4, C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR009071	Domain	High mobility group box domain	Interproscan
IPR022100	Domain	Minichromosome loss protein Mcl1, middle region	Interproscan
IPR036910	Homologous_superfamily	High mobility group box domain superfamily	Interproscan
IPR048591	Domain	DNA polymerase alpha-binding protein Ctf4-like, C-terminal domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19932	WD REPEAT AND HMG-BOX DNA BINDING PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000278	Biological Process	mitotic cell cycle	Interproscan
GO:0003682	Molecular Function	chromatin binding	Interproscan
GO:0006261	Biological Process	DNA-templated DNA replication	Interproscan
GO:0006281	Biological Process	DNA repair	Interproscan
GO:0043596	Cellular Component	nuclear replication fork	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K11274	WDHD1, CTF4; chromosome transmission fidelity protein 4	-	Chromosome and associated proteins	ko03036	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_56065-0.43 global RNA-seq network