Gene detail

Detailed information of Bpl_scaf_55621-2.10 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_55621-2.10	ARGININOSUCCINATE SYNTHASE	Bpl_scaf_55621	196053	216941	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Bpl_scaf_55621-2.10

TAACATCGAACTAATGCACTACAAGATACCTTATAGGAACAACATATTATTAACTGTAAAAGCAACGGGCGATGGTATTTATGTTTTATATTGTCTTTTGGAAAAAGTCCAAAGTACCACTAACAATACTAAATAGTGAAAACTAAAATGGCTAAGAAAAGGATGTGTTTTGCCTTTCTCTTCACGTAAAGAGACAAAGACCTGAATTTGGTGTTAGCCTGATTTCATCACGCATTTGTTAATCTGATAGAGATATTTTTACCTAAATGTTGTCATGATTATGCAATTCTTTTATTTCTTCTTCATTTTTATGATGCCATTTTGTTTTATATACAGGCCGATGTTGGACAAGAAGAAGACTTTGAAGCTGCTAAGAAGAAGGCAGCTAAACTTGGTGCTATCAAAATGGTTGTATCCGATGTCAGACATGAATTTGTGACGGAGTTCGTTTGGCCTGGGATACAAGCTAACGTTACATATGAAGATAGATATCTGCTGGGGACAGCGCTGGCTAGACCATGTATTGCAAGAGCAATGATCAATGTGGCCATAGCAGAAGGAGCACAATATATTTCCCATGGTGCAACTGGAAAAGGAAATGACCAAATCCGATTCGAGTTGGCTGCCTATGCTCTTCACCCTACAATACAGGTTATTTCACCTTGGAGAATGTCAGAATTCTACACAAGATTCCAAGGTAGAAAGGATTTATTTGAATATGCACGGTTACACAACATTCCAGTTTCAGTAACACCCAAAGCACCATGGAGCATGGATGCTAACCTGATGCACATAAGCTATGAGTCTGGTATTCTGGAGGATCCTGACACTGAAGCACCTAAAGATATGTACCAAATGACAACAGATCCACAAACAGCACCAGATGAACCTGACGTGCTTGTCTTAGATTTCAAGAAAGGTATACCAGTAACAGTTACCAATCCTCAAACGAAAGAATCACTGACAGACCCACTACAGCTGTTCTTATATCTCAATAAAATCGGGGGAAAGCATGGAGTTGGTAGGATTGACATTGTTGAAAATCGTTTTATTGGAATGAAGTCGAGAGGGGTATATGAAACACCAGGTGGTGCAATATTACTAGCAGCACATATTGACATTGAAGTATTTACTATGGATCGGGAGGTTAGAAAAATAAAACGACAACTAGATGTACAATTTGCAGAACAAGTTTATAGAGGATTCTGGTTTAGTCCAGAGTGTGAATTTACACGTAGTTGTATACAGAAGAGTCAAGATGGTGTGACTGGGACAGTTAAAGTTAAAATCTATAAAGGAGGTGTCTATGTATTAGGACGGTCATCGCCAATGTCACTGTATAATGAAGAACTTGTCAGCATGGATGTCCAAGGAGACTATGACCCTATAGACGCAGGAGGGTTTATTAAGATTAACGCTTTAAGTTTTATCTTATCGATTCCAAAGAACAAGCTAATGCTCGATGGTGATGGTAGAGAAGACATTTGCATTCTTAACATAAATAGTCCATATTCAGGAAGGTCCACATACAGTGATAAATTGTTCAAATGGAGAAATGGTCGATATGAAGCTATATTTTTAGACGACGTGAATGTTAACCTTCCCGCCAAAAATTATGCCGGAAAGTCTGTAGCTTGTTTAGACAGATGTGGAAGCGGAAAATATTCCATAATAATATCCACATATTCTCATGGTGGAAAGGGTAATTTTGCTCTTTTAGAAGTTGACGAATTTCACCCATTAACAGATCGCACAACCGGAATCTTGGTGATAAAAGATGTTGCAGATGAAGCTGGAATTTCTCGTTCAACGGGTGGTCGTGGTTTGGTGGTAGGTCCCATTCTGAATGATATTGTTTTACCAGATTCAAACATTGCAATTGTCGAGCGCGTACTCGATGTTCTCATATCGCACGGAGAAAGTAGTGAGCAGCCATTGACGGTCTACTCTGCCAAAAAAGACAAAACCAGAAACAATAACTGGATAAGAGTTGAAGCATTGACTAGATATGGTGCTCCTGCAACTGGAGCACTCGTAACTGTGACTACAAGTACGGACATCAACTTACCACATGTTATCGATGGAGGTTCGGGATATTTATTTCAAATGGAACCTGTCGCCCATTTTGGACCGTGA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00764	Arginosuc_synth	Arginosuccinate synthase N-terminal HUP domain	Domain	Interproscan
PF20979	Arginosuc_syn_C	Arginosuccinate synthase C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001518	Family	Argininosuccinate synthase	Interproscan
IPR014729	Homologous_superfamily	Rossmann-like alpha/beta/alpha sandwich fold	Interproscan
IPR018223	Conserved_site	Argininosuccinate synthase, conserved site	Interproscan
IPR023434	Family	Argininosuccinate synthase, type 1 subfamily	Interproscan
IPR024074	Homologous_superfamily	Argininosuccinate synthetase, catalytic/multimerisation domain body	Interproscan
IPR048267	Domain	Arginosuccinate synthase-like, N-terminal domain	Interproscan
IPR048268	Domain	Arginosuccinate synthase C-terminal domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11587	ARGININOSUCCINATE SYNTHASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000050	Biological Process	urea cycle	Interproscan
GO:0000053	Biological Process	argininosuccinate metabolic process	Interproscan
GO:0004055	Molecular Function	argininosuccinate synthase activity	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0006526	Biological Process	L-arginine biosynthetic process	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K01940	argG, ASS1; argininosuccinate synthase	EC:6.3.4.5	Biosynthesis of amino acids	ko01230	PMID: 28812709
			Alanine, aspartate and glutamate metabolism	ko00250	PMID: 28812709
			Arginine biosynthesis	ko00220	PMID: 28812709
			Fluid shear stress and atherosclerosis	ko05418	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_55621-2.10 global RNA-seq network