Gene detail

Detailed information of Bpl_scaf_55542-0.14 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_55542-0.14	THROMBOSPONDIN	Bpl_scaf_55542	46014	61308	+

Gene Structure

More details in Jbrowse Sequence

CDS

Bpl_scaf_55542-0.14

TGTGCTCTTTATGGTCCATGTTGGAACACATCGGCATGTTTAAACACCGTTCCAGGGTACCAATGTTTGGCCTGTCCACGTGGATATACTGGAACCTTTGAAGATGGACTAGCATGGAATAACACAGTCCGTGTTTTTGAGTTGATGAACATGCAGTTATCTCCCCTACAGGAACAAACCTGTGTTGATATTGACGAGTGTCAGATAGATAATGGAGGGTGTGATTCCTTGTCTCCATGTGTTAATACCATATGTAAGGTTGGGTACACTGGTACTGGTATTTATTGTGGCGTGGATTCTGATCTTGATGGACACCCTGACATAACTCTACCATGTACTGATTGGGGATGTTTTCGTGATAACTGCCGTTATATACCAAACTGTGGACAAGAGGATGCCGAGGGAGACAGAATCGGTGATGATTGTGATGATGATTCTGACAATGATGGTACTATCGATGGCCTGGATAATTGTCCCTATGTACACAGTTGGAACAGAACAGACACAGACAACGATACGGTAGGAGACATTTGTGACAACTGTCCCTCTGTCAATAATACTGACCAAATAGATACTGATGGAGATGGAGTTGGTGATGCTTGTGATACTGACGATGATAACGACGGGAGAGCAGATACTATAGACAACTGTCCACTGATCTCAAACCTTAGCCAGGCTGATACTGATGGTGACAATATAGGGGATCCATGTGATAACTGTATCAATGTCGCTAACAATGGACAGGATGACGATGATCAGAATGGATATGGAGATGTATGTGATCCTGATTTAGATGGAGATGGTGTGGCAAATGAGATAGATAACTGTCCATATCTTAGTAATCCATTACAGACAGATATAAATGGAGATCAGGTTGGTGATGATTGTGTTGTGGATTCAGACAACGATGGTGTAGATGATGGTAACGACACATGTCCTTACAACAGGTATAGATCTACTACTTCCTTCAGAGATTTTTTCTCTGTTGACCTTTACCCTGGATACAGTACAGACCCAATGTGGAGAGTTAAAGGTGTTGGTAGAGAAATATACCAGTTAGCTGATACCAGTAAACCAGTCATGTTGATAGGTGAGCAAGTCTATGGCTCCATAAAATACAGTGGCACTGTGTATGTCCGGTCTGATAAGGGAGATAACTACATTGGTATTGTTTTTGGCTATGTCAACAATAGGAAGTTTTATCTGTTGTCATGGAAACCAACTCATTATAACTTTGAAACAANAAGATTTCAAACTGGAATAAAGGGAATAAATTTGAAGATAGTAGAATCAAACACTGGTCCCGGGGAAGCTTTTGCTAATGCTTTATGGCACAGTAGTACAACAGGAAGTCAGGCTACAGTTCTGTGGTATGATGGGAATATGACACGCTGGAGTAATTATACATCATATAAATGGTTTTTGACACATTACACAGAATCAAGTAGAATAAGTTTTACAGTTGGTGTATGGATAATGTTAGATGATCTGACAGGAGGAGAAATGCCTGTTTTCTGTACAGACTCCCGATCCATATGCCTGTGGTTAGATGGGGATGATGTATATGGACAGTATGGAAACTCGACGGTGAATTCAACATTTACTGGTACTGTGAATGAATGGATTAGTTTGGTGTATATATATGACGAATCAGAATATTCTCTCAAGTTGTATGTGAATGCAACCCTGTCAGGACAAACTAACGATATCCCTCCTGTTGATCTGGGCAATTATACTTCAGAAGACGATACAGTGATTTATCTTGGGAAAGATGTCAGTCGTTTTTATAAAGGATACATTGATGAGTTAGTATTTTACAATACAGCATTATTAGAAACAGAGATAGCAGACCATGTTATGTTACCATCCATCACTAGATATCCAACATTGTACAAATATGGTCAATTGTATTACAACATGAACCAGTTAACTGGGACCATATATCTAGAGAATTCTGGACTGTTGGCTGTGCCAGGAGAAATACATGGAAGTCCAAGTTTTAGAGCAGTAAGTGGGCCTTACATACCG

Transcript

Bpl_scaf_55542-0.14

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02412	TSP_3	Thrombospondin type 3 repeat	Domain	Interproscan
PF05735	TSP_C	Thrombospondin C-terminal region	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003367	Repeat	Thrombospondin, type 3-like repeat	Interproscan
IPR008859	Domain	Thrombospondin, C-terminal	Interproscan
IPR013320	Homologous_superfamily	Concanavalin A-like lectin/glucanase domain superfamily	Interproscan
IPR017897	Repeat	Thrombospondin, type 3 repeat	Interproscan
IPR028974	Homologous_superfamily	TSP type-3 repeat	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10199	THROMBOSPONDIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005509	Molecular Function	calcium ion binding	Interproscan
GO:0005576	Cellular Component	extracellular region	Interproscan
GO:0007155	Biological Process	cell adhesion	Interproscan
GO:0062023	Cellular Component	collagen-containing extracellular matrix	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K04659	THBS2S; thrombospondin 2/3/4/5	-	PI3K-Akt signaling pathway	ko04151	PMID: 28812709
			ECM-receptor interaction	ko04512	PMID: 28812709
			Phagosome	ko04145	PMID: 28812709
			Focal adhesion	ko04510	PMID: 28812709
			Human papillomavirus infection	ko05165	PMID: 28812709
			Malaria	ko05144	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_55542-0.14 global RNA-seq network