| Gene ID | Annotation | Scaffold | Start | End | Strand |
|---|---|---|---|---|---|
| Bpl_scaf_55453-6.9 | SUCCINYL-COA SYNTHETASE BETA CHAIN | Bpl_scaf_55453 | 725710 | 748334 | + |
| CDS | |||||
| Bpl_scaf_55453-6.9 | |||||
| Transcript |
| Bpl_scaf_55453-6.9 |
| Protein |
| Bpl_scaf_55453-6.9 |
| Gene family | Subfamily |
|---|---|
| - | - |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00549 | Ligase_CoA | CoA-ligase | Domain | Interproscan |
| PF08442 | ATP-grasp_2 | ATP-grasp domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR005809 | Family | Succinate--CoA ligase-like, beta subunit | Interproscan |
| IPR005811 | Domain | ATP-citrate synthase/succinyl-CoA ligase, C-terminal domain | Interproscan |
| IPR011761 | Domain | ATP-grasp fold | Interproscan |
| IPR013650 | Domain | ATP-grasp fold, succinyl-CoA synthetase-type | Interproscan |
| IPR013815 | Homologous_superfamily | ATP-grasp fold, subdomain 1 | Interproscan |
| IPR016102 | Homologous_superfamily | Succinyl-CoA synthetase-like | Interproscan |
| IPR017866 | Conserved_site | Succinyl-CoA synthetase, beta subunit, conserved site | Interproscan |
| IPR034722 | Family | Succinate--CoA ligase [GDP-forming] subunit beta, mitochondrial | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR11815 | SUCCINYL-COA SYNTHETASE BETA CHAIN | Interproscan |
| GO terms | Category | Description | Source |
|---|---|---|---|
| GO:0003824 | Molecular Function | catalytic activity | Interproscan |
| GO:0004776 | Molecular Function | succinate-CoA ligase (GDP-forming) activity | Interproscan |
| GO:0005524 | Molecular Function | ATP binding | Interproscan |
| GO:0005739 | Cellular Component | mitochondrion | Interproscan |
| GO:0006099 | Biological Process | tricarboxylic acid cycle | Interproscan |
| GO:0006104 | Biological Process | succinyl-CoA metabolic process | Interproscan |
| GO:0042709 | Cellular Component | succinate-CoA ligase complex | Interproscan |
| GO:0046872 | Molecular Function | metal ion binding | Interproscan |
| KO | Enzyme | Enzyme ID | pathway | mapID | Source |
|---|---|---|---|---|---|
| K01900 | LSC2; succinyl-CoA synthetase beta subunit | EC:6.2.1.4 EC:6.2.1.5 | Carbon metabolism | ko01200 | PMID: 28812709 |
| Citrate cycle (TCA cycle) | ko00020 | PMID: 28812709 | |||
| Propanoate metabolism | ko00640 | PMID: 28812709 |
| 1. Expression trend for Bpl_scaf_55453-6.9 global RNA-seq network |
Maintained by Dr. Jiajie She in Longjun Wu's Lab & Pei-yuan Qian's Lab and supported by Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou) & The Hong Kong University of Science and Technology
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