Gene detail

Detailed information of Bpl_scaf_55453-4.4 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_55453-4.4	SPLICING FACTOR 45 SPF45	Bpl_scaf_55453	397663	427062	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Bpl_scaf_55453-4.4

TGTGTCCAAAAAAACGGGACAGTTTTTCTACATTTGTAAAAAAAAAAGTTATTAATGCAAAAACCTAAATCTGATCACCAGAAAAGCGAGAAGTTAATGATAAGCACATGTAATAACTTCAACAAAATCCAGAAAAATGTCATTATATGATGGGTTAGATATTGACAAAGATGATGGCACATCAAAATCGGATGTTGCTGGTTGGTCATCCAGTTTCAAGTTGCTGCAGTCACAGCTTCAAGCTAAGAAAGCCAATTTAATGCAAGTTAAGAAACAAAAGTCCAGCAGTAATACTATGGCTCCAGTAATAGATTTGAAGAAGAATGATGTCTACAGTGACCTACACTTTAATATGTTAACAGGCAGATTAGAGCGATTGTCAGAAACCTTCACTGGTGGATCTCCATTTTTACCTTCTGATCCACAACCTTCATTGACAGGGGTCATAGATGAATATGAACCCTTACGTCCAAACGACTACGAAGATTTCGTCAAAAAAAGAAAAGAACAAAGATTGAAGGAAAGAGATGAAGAAAGAAACAAAAAAGATTTGGATGATGACAAAAGGTATGGTGATTCTGAAGAGATTGAGACTCCTAGGAGAAGGCATGACGACAACTGGAATCGTAATAACCATAGAGAGAGTCCTGACCTAAGACAAAAATATGGCAACAATGACGATCTACCTCTACCTCCAAGACGTAGACACGATGATAACTGGAATCGTGGTGAATATCAAGATAGTCCAGGCCATGATCCCAGACCAAAGTATGGTAACAATGATGATCCATCTCCGAGACGTAGACATGATGATAAGTGGAATCGTGGCGAATATCAAGATAGTCCAGGCCATGATCCTCGACCAAAGAGGGGACGCAGAGATCATAATCGGGATAGAAATAGAGATCGAAGTGATGAGCGAGGTGGAGAACTGGAAAGAGCAAAACGAAGACATGAAGAAGAGGAAGAAGATTATGAAAAACCAAAACGACCAGCTGGTGGTATGGGAGCAGCCATTGCCCCACCTCCTTCACTGATAGAGGAGCCTCCAGTGGAAGTACCAGGACGAGCACAGTCACCACCTCTAGGACACAGTATTGGTCTTGGAGGATCAGTAGCTTCTAAAATTATGGCGAAATATGGATATCGTGAAGGTCAAGGTCTTGGTAAATCTGAACAAGGAATGAGTACAGCATTATTTGTAGAGAAAACCAGTAAAAGAGGAGGAAAAATTATACATGAAAAGGATATCCCTAAAGAGCCTCCAAAAGAATTACAGCCAAACACAAATTTATTGAAAAATCCTTCAAAAGTTATTTTATTACGGAATATGGTTGGTCCAGGTGAAGTAGACGAAGATTTAGAACCAGAAACAGCTGAAGAATGTACTAAATATGGAAAAGTTATCAAGTGTATGATATTTGAGATACCAGGAGTTGATGAAGAAGAATCTGTCAGAATATTTATAGAATTTGATAAAGTTGATGCTGCCATTAAAGCTGTTATTGATTTAAATGGACGTTTTTTTGGAGGAAGAACTGTGAAAGCTTGTTTTTACAATTTAGATAAATTTAGACGATTAGATTTAGCTGATGAAACAGACTGATCAAATAGAATCAGATAAATACAAGGGCAGCAAAAATCTGTGTTGAAATTTTTGAATATTGAAGTGAATCTTGTTGAATATTGAAGTGAATCTGCTACAAATATAATTGTTGATGGTATATTGCGTTTAGATATGTCTAGGTCAAGGAAAACACCAGAACTATCAGTACACTTGAGTTAAATAAAGGAAGGAATTCATCATGGAATCCTTGATTGAGATCATATTAAAATGAAACATGTTGTTTTGGTTGTCAAATTTGTCCATAGTTTGAAATTAACACTTAACCAACCACAACAGAATGAACGACTCCTCTGGAAAGTCATAAACTGCTGAATCACAAGTACAGAAACATGGAAATATAGGTTCCATAATGGCTCAGGCACAAAAATATGAGTGTTCAACTTTAATTTGCATACCAATCAAAATCTCTAAAAACAAGGTTTTCATTGTACAATTATTACTGTTGTACAATGTGTTTTATTACAGAATGAATATTTAACCTTAATCTTGTATTAAATACTATTTTATATAAATATCGTGATAATGAGACTAAATACATGGAATAAAAATACAAAA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan
PF01585	G-patch	G-patch domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000467	Domain	G-patch domain	Interproscan
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR003954	Domain	RNA recognition motif domain, eukaryote	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR034653	Domain	SPF45, RNA recognition motif	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR040052	Family	Splicing factor 45	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13288	SPLICING FACTOR 45 SPF45	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000380	Biological Process	alternative mRNA splicing, via spliceosome	Interproscan
GO:0000398	Biological Process	mRNA splicing, via spliceosome	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0045292	Biological Process	mRNA cis splicing, via spliceosome	Interproscan
GO:0071011	Cellular Component	precatalytic spliceosome	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K12840	RBM17, SPF45; splicing factor 45	-	Spliceosome	ko03040	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_55453-4.4 global RNA-seq network