Gene detail

Detailed information of Bpl_scaf_55453-0.10 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_55453-0.10	DECARBOXYLATING DEHYDROGENASES-ISOCITRATE, ISOPROPYLMALATE, TARTRATE	Bpl_scaf_55453	39655	60583	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Bpl_scaf_55453-0.10

ATGCACAGGTCTTTGGCCAGAAATCTGCCGAGGCTTTTAAATTTGGCAAAGAAGGAAACAGGGAAATGTTCGGTAATATCAAGAGATAACATTTTACTTATTTTAGAACGGATTTTGGGTTCACAATGTGCCAGTTTTTCACAGACAACTTACACAGAACCAAAGACGAATTTATCACGTTATGGAGGTAGAAATACAGTAACAATTTTATCTGGTGATGGAGTAGGGCCAGAATTAATGTCACATGTACAAGAAGTCTTCAGATATGCAGGTGCCCCTATAGATTTTGAGGAAATAGAAATGAATTCTACAACAACAGACCCAGAAATAATGAGAGGAGCTCTTCTTTCTGTGCAGAGAAATGGTGTTGCAATTAAAGGAAACATAGAAACCAAATTTGATGATCCAAGTTTCAAATCAATGAACGTTGAGTTAAGAACAGAGTTAGGCTTGTTTGCAAGTATTGTGTGGTGTAGATCCATTCCTGCAGTAAAAACCAGACACAGAGATATAGATTTAATATTAATAAGAGAAAACACAGAAGGAGAATATACCAATTTGGAGCATGAGAATGTTCCTGGAGTTGTTGAAAGTTTAAAGATAATAACTGCAGAAAAATCATGTAAAATAGCAAAGTATGCATTTGATTTTGCTAAAAGACATGGGAGAAAGAAAGTAACTGCAATACATAAAGCAAACATCATGAAACTTGGAGATGGTTTATTTTTAGAAAGCTGTAGGAAGATGGCCTGCTTATATCCAGACATAGAATTTAATGATATGATTATTGATAATGCTAGTATGCAGATGGTATCTAAACCACAACAGTTTGACGTGTTGTTGATGCCTAATCTCTATGGTAACATATTAAGTAATATAGCAGCAGGTTTAGTTGGAGGTCCTGGTGTTGTCCCTGGGATGAATCTCGGTGAAGACTATGCTGTATTTGAACTGGGAACTAGGAATTCTGGTAGATCTTTAAAAGGAAAGAACATAGCTAATCCTACAGGACTTTTATTAGCAAGCTGTGATATGTTAGATTATCTAGGGCACTATGAACATGCCAATTTAATAAGAGACTCTGTCATGGATGTATTGTGTGAGAAAAAGATTCATACACCTGATTTAGGTGGAACTTCAACTACACTAGAGGTGGTACAGGCTATAATAGAAGATATTAAACCTAAAGCCAGAAGTTGGAGTGATACTGTTGCACAAAATTTATACAGTACAAAACCATGACGGCAATCACTATGGAAGCTGGCCATCTGAATCTTCATAAACAACAAGCCCATGGAATGTAGTAATATAGTGGTTACAGAACAATTATAGTAATCGAAGTATTGAATCCAGAGATATCTTATTTTAATTTTAGGTTACAGATGTGTAGCAAAAGAGTGTAACAAGCATAATATATTTGCCGTTTTTATGATAATGTTTGTTTTGAAGGAAATGATGTTAATCCCATCACTGATTATTGCTGAAAATATTGTTTTATGAAATCTTATTATGTTAACAGTGTTAGTGATCTAGAGATTTTGTTTGAACGTAGACATTGTGATCAATAGGAAAAAAAATCATAATTACCGGTATGTTAATGTTGTAAAATATAGAATATTTATTGTTATTATCAAATATTTATTGTTTTACATTTATCATAGCAACTCCTTGAAATATAATTCACACTGGGGTAAGTGGGGATATTGTTTCATTAAATGATTGATTGATTGATTGGTGCTTAATGCCAACTTAAGCAATATCAGCTATATTGTGGCATGTTTTTATTATTATTATTAAATAAGTGTGCAATATTTAATGGAATTCATATTTGAACTATAAAATTAAATTCTCAATGCATGTACATGTGCATTGTTGGGGGATATTAAAATTTGGTTGAAGACTGAAATGTAATGTTTACAGAACAACATTATTTTTCTGTGATGGTGAAGAACATTTGTTTGTCCTCCTATACTTCAAATTTTTAATTAAACAATGAAAAATGACATTAAAATAAAATACACCCATACAATCTTTGTTATGCATGATGTAACTAGTAAAATAACGTTTATGACATTTTTTTTTTAGCACTATTCAGTACCCCCTCTTATAAGGTCACATCCACCAATGGCCATCTCTCTTATTATACCCCCGCTCCCCGGAGGGGGAGGGGGGTATAATGTTTTACCTCTGTCTGTCCTTCCGTCCTTCTGTCCGTCCCAAGATATTTTTCGTCACATTTTTCTCAGCAACTATTGATGGCAGAAATCTGATATTTGGTCACAAGCTTCATATAGGTACCCCATATCGTTGTAAGCGTTTTTGGACCGATCAGATTCCTACTTCCTGTTTGCCGAACAGCGGGGGTATCATATGTGAGCATTAGCTCACAGTTCATCTTGTTATGCCATATTTCAAATGTGCTTAGATAGTAAAATACTACTAAATTGTCCCCCTCAAGTGAAGCCACTCCCTGGAAGACTTACCACTAAGTTTAAGAAATCTGTCTTGCCCATTTTTAAATTTTAAATTTATTAACAGTATCAAAGGATAAAATACAGGTATATCATGACACACATATTGGAAGCAATGGTGATATATGTGAAGATTCCTGATTAACCGATTCAAAAATAGAGGTCTGAAAGGGGGAATTTTTATTTTGTTAGTTCCACTGGTATTTAATTACACATTTATTAATTAATATTAATATCTTTTAATGTTAATCATTGCATTCAGGCTCATTTTGTATGGATCATGTTATTAGAGGTAGCCACTGCTTACCTATTGTGAACACCTGGGTTCACCCCTGGTTTTTGGTGGGGTCAGTGTTGTTCATCTTTTTAGTTTTCTGTGTTGTGTTTTTGAGTTTGTTTGTCTTCATCCTGTGTTTTGTGTACCCAATGTTGCCAGTGTCTCTGGATTGTCCATTCCTGGTAGCCCCTTCTAATGTTTATTTATATATTGCAGTTGTATCATGTTTTGATGGTGGAGTCCTTCATTACAAATTATATAATTTATTTGTTGTTTATGATCAGGAATGTTGATAAAATGTTGTCAATACATATGAATGACATATAATATTGTTATCATTGAGCCTGATTAGCT

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00180	Iso_dh	Isocitrate/isopropylmalate dehydrogenase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR004434	Family	Isocitrate dehydrogenase NAD-dependent	Interproscan
IPR019818	Conserved_site	Isocitrate/isopropylmalate dehydrogenase, conserved site	Interproscan
IPR024084	Domain	Isopropylmalate dehydrogenase-like domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11835	DECARBOXYLATING DEHYDROGENASES-ISOCITRATE, ISOPROPYLMALATE, TARTRATE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000287	Molecular Function	magnesium ion binding	Interproscan
GO:0005739	Cellular Component	mitochondrion	Interproscan
GO:0006099	Biological Process	tricarboxylic acid cycle	Interproscan
GO:0006102	Biological Process	isocitrate metabolic process	Interproscan
GO:0016616	Molecular Function	oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	Interproscan
GO:0051287	Molecular Function	NAD binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K00030	IDH3; isocitrate dehydrogenase (NAD+)	EC:1.1.1.41	Carbon metabolism	ko01200	PMID: 28812709
			2-Oxocarboxylic acid metabolism	ko01210	PMID: 28812709
			Biosynthesis of amino acids	ko01230	PMID: 28812709
			Citrate cycle (TCA cycle)	ko00020	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_55453-0.10 global RNA-seq network