Gene detail

Detailed information of Bpl_scaf_5544-1.9 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_5544-1.9	RNA POLYMERASE III TRANSCRIPTION INITIATION FACTOR COMPLEX SUBUNIT	Bpl_scaf_5544	145880	182797	+

Gene Structure

More details in Jbrowse Sequence

CDS

Bpl_scaf_5544-1.9

ATGGATAAAAAAAGAAAAACAAGGAATTTTATTCAGAAGACTTCGACTCCAAGATCAACTCCCAATAAAATGGTTGTTACAAAGACTAAATCACAGACACTGACATATAGTCCTATACTACATGTACATGAGGAAGAAAATCTGTCTCAGATGGACAAAGATTCATTTATACGATCGTTACGACTTATCTCAAGTGATGGATCTACCGATGAAGACAAGATGACTGAATGTGGAGACAAAAAGAAAGATTCCTTGTCAGGGGATACCAGTATGTCATCAGAAAATAATTTGTCTATAGAGGAATACTGTAGGAAAATTCCTTGGAAAAATACACCAGTTCATGTTTATGGCTTGACAGACAATACAGTCTCAAAATTGAACTCTCGTAAAAATATTAACACTTGTTCGGGCAAAGAGAAACAATTGAAGGAGTGTAGTACAGAAAAAAACAAAACCAAGAAAGTCAAAACTTCAAAATGTAGTCCTGTTGTTGATTCTAATAGACATTTAGACATGAAGAAAACAAAACAAAATTACAAAAATAAATCCTCGACAAATGTTCATATTTGGGAGGCAATAGAATCTGCTTGTAACAACAGTATAGATAAAGATACCAATCTGGAGACAAATAAAAGCAAGAGTACACTGAGGCTTGATGAAAGTGTGAAATCAAAAACTATTAAAAGTCCTGGAAAAAGATCTCATCCCCAAAGGGTCAGAAAAACTCCAAAAAAATTCATGGATTTTCAGGACGAAGTACGAAATGAATTAATGGAAAATTCCACTTCAGACGTTGATATTATAACAAAATCTAAAGACACGATTACATATTCAAATAAGAAAAATGAATCAACCAATGAGTCGCAAGGAGGCCTAGATAGGAGTGAAAATTCGTTAGGTTCCGACAAAAAAAGAAAAACCTTGTACTCTTTTAAAGAAAAATATTCAGATGAAGTAATAAATAGTCAAAATGAAAGCTTAAACAACAGTTTCCTGAAATCTTGGGATGACGTCAGGACTGATTTAGTGAAAATTGGAAGTAATGTTGGCATAAGTGTATCTACTGAAAAAGTACAGAAGAAACGAATAAAGTCAAAGCAGACATTAAATGTGTCTGGTGGTAAACATTCTGTGAGAAAAATAGGATCAGAAGATATCAGTGAAAACAATTTGGAACTCGTTTCAAAATCTGATGTTAAAGACCCAGTTTCTACTCAAAAGAAATCTAATTGTTTGATTAAAAGAAGTCCAAAGTCGGGACAGAAATCTACAAAAAAACGTCTCTCTGAAATTTTACCAGTTCCACAAACTAACAGAGCTAAAAGAAAAATAATTGACGAAAATGAGGATGAATATGGAAGTGATGGGTCAAATAAAAGACAAAAACAGGAAGTTGAACAAAGGGAAGTAAGTCTGTATGATAAGAATGATGAATTGGAAAGTTATGGTGAAATTGAAATTTTAGATTCTGATCAAGACGTTGTAGAAAATGTTAAAAGAACAACAAATAGAAATAGTAAACGTAACATTTCAACAACTAGAAAGTCGAAGAGAAGTAGTAAAAAAAATGTTGAAACTACCATTGAAGATGATGTCACTTTAGAAACGGATGTAGTGCCTTCTTGCACAGAAATTCCAAAAAGTTTAGGTTTAGATAGCGAAAGTCAACAAAGTTTAAATAATTCTTTCAATGACGAAACAAGAAGTGTAAGATCCCGTCGAAGTAAGAGTAATGTTAATCTGAGTGATTACGTGCAACTGAAAAAGCAAAGTAACAAGAAGACAAGAAAAAAGAAAGAGGATGCTGGTGACAAGGAGGACAAAATAAAAAAGAATACTATGGATACAGAGAATCATCCATGTTTAAGATGTGGAGCTAAATTCAAGAGTGTGTCTTGTTTGAAGCAACATCTAATGACAGTCCATAATGCCCTGTGGGATAAGAAGTGCCCAGAAGGTTTAACAGATGAAAGATCATTAGCTGCCATCTTAAAGAGAATCGGTAAACTTTTCTGTCCTAAGTGTCGGAAGGAACTGAAATTTATGCATTATTACAGGAAGCATGTCAAATGGTGTGGTCGAGAGAATGAGAAATATTATTGTGATATTTGTAAGAAGTATATCATGGTGATGTGGGAACACGAACATAGCCTGATGCACACGAGGAGGGTTAAGACCGAGGAGTTAGATAAAGAGTATGAAGCTGCCAGAGCCGAGAAAAAGAGCAACGAGGAAACAAAAACAAATACAGAGGGAAAACATAGAAGAAGAACAGCTGCAAGGAAGGCTGAGAAGTTACTTCAGAACATCAATAAGATCTACGAGGGTGTGGTCGACCTGACTTCTGATGAGAAAGACCCTGATGCTGAGATACTGTCAGAATCTTCAGATGATGATGTCATATTTGGTGATTTTATGGACAACGAAGAATTAGAAGATCTTAAAACTACAAATGATTCTAAACAGATGTACACTGGAGGACATTATGCCAACACGTTTTACAAGAATCTAGAACATCATAAACAGATGGACAGATACAACAACGTACAGTTCCCACAGTTCTGTCCACGGGTACCAGAGTGGGATCCATTGAGTGAAAGTGATTCAAAAGATTACATGCCACCAATTGATACTAGTCCTGAGTTCACCATCGTAAATGATATTAAATCTTCTCAGAAAAAGAGTCGACAACAGCTGAAGCAGTTTGAGTCTCTTTGTTCTAAAGATTTTGCTTTCTTATTTGCTGGTGGACCAGTTTGGGGACTTGCCTGGTGCCCTCATCCTCAGGTACAGAGAGGACAGTCACAGTACCTAGCCGTGTCCTGTCATGGAAGTATGGATTCTTTACACCCTATTGAGAAGGCAGAAGAGGGTCCAGGACTTATTCAGATATGGAATATAGGAAAACTTAACCAAACACTGCAATCCATACCAAAACCAAAGTTAGAATTCTGTCTTGCTCATGATTATGGTATCGTAAGAAGAATGACGTGGTGCCCATTTAGAAGCTGGCAGTCAAAAGAAGATTCGGTGGAGGAAGACAAGCTACGACAGCTAGGTCTGTTAGCCATAGCTTGTGGAGACGGATCCATTAGAATATTTAGTATACCTAATCCAGCATCATTACAAAACAATGATAGAACAACTCCTACAGTTTACAGACCTACACCTGAAGTTACACTGGTAGGACATAAAATCAGACGAGGTAAAACATCTAGTTGTACGTCTGTTGCCTGGTCAGTAAAGGAGGGCAACTATATACTTGGAGGTTATGGTGATGGGTCTGTTAGAATTTGGGACCTTTGTACAACATCAACACTTCTCCGAATATCTACCCCAGACCAGGGTTTATTGCTGCTACCGTTTAGAACATTTGTTCCTCATGATAAAACAATAACAGATTTGAACTGGTGTCCTCACAGTTCTAAGCATTTTATAACATGTAGTCTAGATAGAATAGCTAAAGTTTGGAGTTTAGACAATTTAGTAATGCCACAAGTTTCAATGAAGTCGAGTGCGTTAACGGCAGCAAAATGGCCGACGATCGTACAGAGTGTCGTGTACTCAGATGATGATGTCTACGTACAACAGAAAGGACATGTCCGTCTGCAGAGTTATGGAGACCTAAGAGATGCTAACAGGGCTATAAATTCTCCATTACAAGCTGTACCTACAGGAATTTGGGATGTTTCTGTATCTAATTGGCATCTAATGGTCTTCAGTTGTGATTTTAATGGTGCTGTCATAGCTACATATTATCCTGCAGTATTTGGTGAAAAGAAGCCACACAGATCAAAATTACTTCTCTACAAAGTATTCTTAAAATCAAAAAATAAAGGCAGTGAGGGAGAATCCAATGCATCAGCTGACGGTAACCATGACAACAGTGAGGCTAACAATAATACATCAGAAGTTTTAAAACCATCCCAAAAACAGAATACAACAGCTGAGAGTAACCATGGCAACAAAGATATAACACAAACTTATACAGACACTGTCAACAAATATTATTTGGAATATATAGAACAATCGACTTTAGACAGAAGAATTGCTTTTGAAGATAATTTAGATTTGACCCAGTTTCCCTTGACCTCTGTCTACAGAGTTGAGGTGAATCCAAACTTGGAGTCTTGCATGTTTGTGGCCAGCGGTGGCCAGGCAGGAATCATACAGATCCACAATGTCAATAGATATTTATCTTTCTACGCTGCAACAGATCTACGTCAAGAATTACGATTAAATTCTTGA

Transcript

Bpl_scaf_5544-1.9

AGATAATTTCAGTTTAATATGGATAAAAAAAGAAAAACAAGGAATTTTATTCAGAAGACTTCGACTCCAAGATCAACTCCCAATAAAATGGTTGTTACAAAGACTAAATCACAGACACTGACATATAGTCCTATACTACATGTACATGAGGAAGAAAATCTGTCTCAGATGGACAAAGATTCATTTATACGATCGTTACGACTTATCTCAAGTGATGGATCTACCGATGAAGACAAGATGACTGAATGTGGAGACAAAAAGAAAGATTCCTTGTCAGGGGATACCAGTATGTCATCAGAAAATAATTTGTCTATAGAGGAATACTGTAGGAAAATTCCTTGGAAAAATACACCAGTTCATGTTTATGGCTTGACAGACAATACAGTCTCAAAATTGAACTCTCGTAAAAATATTAACACTTGTTCGGGCAAAGAGAAACAATTGAAGGAGTGTAGTACAGAAAAAAACAAAACCAAGAAAGTCAAAACTTCAAAATGTAGTCCTGTTGTTGATTCTAATAGACATTTAGACATGAAGAAAACAAAACAAAATTACAAAAATAAATCCTCGACAAATGTTCATATTTGGGAGGCAATAGAATCTGCTTGTAACAACAGTATAGATAAAGATACCAATCTGGAGACAAATAAAAGCAAGAGTACACTGAGGCTTGATGAAAGTGTGAAATCAAAAACTATTAAAAGTCCTGGAAAAAGATCTCATCCCCAAAGGGTCAGAAAAACTCCAAAAAAATTCATGGATTTTCAGGACGAAGTACGAAATGAATTAATGGAAAATTCCACTTCAGACGTTGATATTATAACAAAATCTAAAGACACGATTACATATTCAAATAAGAAAAATGAATCAACCAATGAGTCGCAAGGAGGCCTAGATAGGAGTGAAAATTCGTTAGGTTCCGACAAAAAAAGAAAAACCTTGTACTCTTTTAAAGAAAAATATTCAGATGAAGTAATAAATAGTCAAAATGAAAGCTTAAACAACAGTTTCCTGAAATCTTGGGATGACGTCAGGACTGATTTAGTGAAAATTGGAAGTAATGTTGGCATAAGTGTATCTACTGAAAAAGTACAGAAGAAACGAATAAAGTCAAAGCAGACATTAAATGTGTCTGGTGGTAAACATTCTGTGAGAAAAATAGGATCAGAAGATATCAGTGAAAACAATTTGGAACTCGTTTCAAAATCTGATGTTAAAGACCCAGTTTCTACTCAAAAGAAATCTAATTGTTTGATTAAAAGAAGTCCAAAGTCGGGACAGAAATCTACAAAAAAACGTCTCTCTGAAATTTTACCAGTTCCACAAACTAACAGAGCTAAAAGAAAAATAATTGACGAAAATGAGGATGAATATGGAAGTGATGGGTCAAATAAAAGACAAAAACAGGAAGTTGAACAAAGGGAAGTAAGTCTGTATGATAAGAATGATGAATTGGAAAGTTATGGTGAAATTGAAATTTTAGATTCTGATCAAGACGTTGTAGAAAATGTTAAAAGAACAACAAATAGAAATAGTAAACGTAACATTTCAACAACTAGAAAGTCGAAGAGAAGTAGTAAAAAAAATGTTGAAACTACCATTGAAGATGATGTCACTTTAGAAACGGATGTAGTGCCTTCTTGCACAGAAATTCCAAAAAGTTTAGGTTTAGATAGCGAAAGTCAACAAAGTTTAAATAATTCTTTCAATGACGAAACAAGAAGTGTAAGATCCCGTCGAAGTAAGAGTAATGTTAATCTGAGTGATTACGTGCAACTGAAAAAGCAAAGTAACAAGAAGACAAGAAAAAAGAAAGAGGATGCTGGTGACAAGGAGGACAAAATAAAAAAGAATACTATGGATACAGAGAATCATCCATGTTTAAGATGTGGAGCTAAATTCAAGAGTGTGTCTTGTTTGAAGCAACATCTAATGACAGTCCATAATGCCCTGTGGGATAAGAAGTGCCCAGAAGGTTTAACAGATGAAAGATCATTAGCTGCCATCTTAAAGAGAATCGGTAAACTTTTCTGTCCTAAGTGTCGGAAGGAACTGAAATTTATGCATTATTACAGGAAGCATGTCAAATGGTGTGGTCGAGAGAATGAGAAATATTATTGTGATATTTGTAAGAAGTATATCATGGTGATGTGGGAACACGAACATAGCCTGATGCACACGAGGAGGGTTAAGACCGAGGAGTTAGATAAAGAGTATGAAGCTGCCAGAGCCGAGAAAAAGAGCAACGAGGAAACAAAAACAAATACAGAGGGAAAACATAGAAGAAGAACAGCTGCAAGGAAGGCTGAGAAGTTACTTCAGAACATCAATAAGATCTACGAGGGTGTGGTCGACCTGACTTCTGATGAGAAAGACCCTGATGCTGAGATACTGTCAGAATCTTCAGATGATGATGTCATATTTGGTGATTTTATGGACAACGAAGAATTAGAAGATCTTAAAACTACAAATGATTCTAAACAGATGTACACTGGAGGACATTATGCCAACACGTTTTACAAGAATCTAGAACATCATAAACAGATGGACAGATACAACAACGTACAGTTCCCACAGTTCTGTCCACGGGTACCAGAGTGGGATCCATTGAGTGAAAGTGATTCAAAAGATTACATGCCACCAATTGATACTAGTCCTGAGTTCACCATCGTAAATGATATTAAATCTTCTCAGAAAAAGAGTCGACAACAGCTGAAGCAGTTTGAGTCTCTTTGTTCTAAAGATTTTGCTTTCTTATTTGCTGGTGGACCAGTTTGGGGACTTGCCTGGTGCCCTCATCCTCAGGTACAGAGAGGACAGTCACAGTACCTAGCCGTGTCCTGTCATGGAAGTATGGATTCTTTACACCCTATTGAGAAGGCAGAAGAGGGTCCAGGACTTATTCAGATATGGAATATAGGAAAACTTAACCAAACACTGCAATCCATACCAAAACCAAAGTTAGAATTCTGTCTTGCTCATGATTATGGTATCGTAAGAAGAATGACGTGGTGCCCATTTAGAAGCTGGCAGTCAAAAGAAGATTCGGTGGAGGAAGACAAGCTACGACAGCTAGGTCTGTTAGCCATAGCTTGTGGAGACGGATCCATTAGAATATTTAGTATACCTAATCCAGCATCATTACAAAACAATGATAGAACAACTCCTACAGTTTACAGACCTACACCTGAAGTTACACTGGTAGGACATAAAATCAGACGAGGTAAAACATCTAGTTGTACGTCTGTTGCCTGGTCAGTAAAGGAGGGCAACTATATACTTGGAGGTTATGGTGATGGGTCTGTTAGAATTTGGGACCTTTGTACAACATCAACACTTCTCCGAATATCTACCCCAGACCAGGGTTTATTGCTGCTACCGTTTAGAACATTTGTTCCTCATGATAAAACAATAACAGATTTGAACTGGTGTCCTCACAGTTCTAAGCATTTTATAACATGTAGTCTAGATAGAATAGCTAAAGTTTGGAGTTTAGACAATTTAGTAATGCCACAAGTTTCAATGAAGTCGAGTGCGTTAACGGCAGCAAAATGGCCGACGATCGTACAGAGTGTCGTGTACTCAGATGATGATGTCTACGTACAACAGAAAGGACATGTCCGTCTGCAGAGTTATGGAGACCTAAGAGATGCTAACAGGGCTATAAATTCTCCATTACAAGCTGTACCTACAGGAATTTGGGATGTTTCTGTATCTAATTGGCATCTAATGGTCTTCAGTTGTGATTTTAATGGTGCTGTCATAGCTACATATTATCCTGCAGTATTTGGTGAAAAGAAGCCACACAGATCAAAATTACTTCTCTACAAAGTATTCTTAAAATCAAAAAATAAAGGCAGTGAGGGAGAATCCAATGCATCAGCTGACGGTAACCATGACAACAGTGAGGCTAACAATAATACATCAGAAGTTTTAAAACCATCCCAAAAACAGAATACAACAGCTGAGAGTAACCATGGCAACAAAGATATAACACAAACTTATACAGACACTGTCAACAAATATTATTTGGAATATATAGAACAATCGACTTTAGACAGAAGAATTGCTTTTGAAGATAATTTAGATTTGACCCAGTTTCCCTTGACCTCTGTCTACAGAGTTGAGGTGAATCCAAACTTGGAGTCTTGCATGTTTGTGGCCAGCGGTGGCCAGGCAGGAATCATACAGATCCACAATGTCAATAGATATTTATCTTTCTACGCTGCAACAGATCTACGTCAAGAATTACGATTAAATTCTTGATATACGGGGGA

Protein

Gene family

Gene family	Subfamily
Ubiquitin Family	E3\|E3 adaptor Cullin RING\|DWD

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00400	WD40	WD domain, G-beta repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001680	Repeat	WD40 repeat	Interproscan
IPR013087	Domain	Zinc finger C2H2-type	Interproscan
IPR015943	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR019775	Conserved_site	WD40 repeat, conserved site	Interproscan
IPR036322	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR052416	Family	General transcription factor 3C component	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15052	RNA POLYMERASE III TRANSCRIPTION INITIATION FACTOR COMPLEX SUBUNIT	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000127	Cellular Component	transcription factor TFIIIC complex	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0006383	Biological Process	transcription by RNA polymerase III	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K15200	GTF3C2; general transcription factor 3C polypeptide 2	-	Transcription machinery	ko03021	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_5544-1.9 global RNA-seq network