| Gene ID | Annotation | Scaffold | Start | End | Strand |
|---|---|---|---|---|---|
| Bpl_scaf_55395-3.23 | WD40 REPEAT PROTEIN SWD2 | Bpl_scaf_55395 | 371452 | 380244 | - |
| CDS | |||||
| Bpl_scaf_55395-3.23 | |||||
| Transcript |
| Bpl_scaf_55395-3.23 |
| Protein |
| Bpl_scaf_55395-3.23 |
| Gene family | Subfamily |
|---|---|
| Ubiquitin Family | UBD|Other|Beta-prp |
| Ubiquitin Family | E3|E3 adaptor Cullin RING|CDC20 |
| Ubiquitin Family | E3|E3 adaptor Cullin RING|DWD |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00400 | WD40 | WD domain, G-beta repeat | Repeat | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR001680 | Repeat | WD40 repeat | Interproscan |
| IPR015943 | Homologous_superfamily | WD40/YVTN repeat-like-containing domain superfamily | Interproscan |
| IPR036322 | Homologous_superfamily | WD40-repeat-containing domain superfamily | Interproscan |
| IPR037867 | Family | COMPASS component Swd2/WDR82 | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR19861 | WD40 REPEAT PROTEIN SWD2 | Interproscan |
| GO terms | Category | Description | Source |
|---|---|---|---|
| GO:0003682 | Molecular Function | chromatin binding | Interproscan |
| GO:0005515 | Molecular Function | protein binding | Interproscan |
| GO:0048188 | Cellular Component | Set1C/COMPASS complex | Interproscan |
| KO | Enzyme | Enzyme ID | pathway | mapID | Source |
|---|---|---|---|---|---|
| K14962 | WDR82, SWD2, CPS35; COMPASS component SWD2 | - | mRNA surveillance pathway | ko03015 | PMID: 28812709 |
| 1. Expression trend for Bpl_scaf_55395-3.23 global RNA-seq network |
Maintained by Dr. Jiajie She in Longjun Wu's Lab & Pei-yuan Qian's Lab and supported by Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou) & The Hong Kong University of Science and Technology
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