Gene detail

Detailed information of Bpl_scaf_5539-1.28 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_5539-1.28	SIGNAL RECOGNITION PARTICLE 68 KDA PROTEIN	Bpl_scaf_5539	177328	188066	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Bpl_scaf_5539-1.28

ATGCTGAGGAGCTGGCAGAGTTATGCCTATTTGTCTTGGATACAAGCTGGGATGTATTTTGAACAAGAAACATGGGACAAGGCAATGAAGTTGTATACACAAGCCAAAACAATATATGAGAAATTGGCTACTGCCTTTACAGAAGATAGTCAAGTACTTTATATGCAAATGGTAGAAGAGGTATCTCCAAACATCAGATATTGTGCCTACAATATCGGTGACGAGTCTGCCATTGCTGAACTGAAGCAGATGAGACGTAAAGGTGGAGAGGATCAATTAACATCACATCTTGATGACTTGCTTTCACAAACTCGAGAGAAACAAACAGCTACCTTGTCAGAAGTGACATGGTTAGGGCGTACAGTACCAGTAAAGAGTGAACCAGTACGAGTGTTCTTACTCAATCTACAAGAGAGCAATAAAGAAATAGAATCTGCTGATGAAATTGATAGCAAGATCTCTATCTACGAAAGTTTACTGAAGCAATGCATTGATGCTCAACAAATACTGAGGGACTCCCTACAAGAAGATGCTAGTTTTAAAGCCGCTCAACGTGGTCAAGCAATTGAGGGTAAAATATCGAATCAACACTACCTACATAGCTATTTAATGTACATACGACTATCTAAAACTGTAGACCGGAATTTGTTAATGATAGAAAAATTAAAGCAATATCTGCCTGGAAAGCCAGTTCCAGAAGGCCATAAAATTACAAAACCACAAGACCTTGTTAGACTATATGATATTATTATACAGAATTTGAATGAGATACCAAATTTACAAGGCATCGAGGAAGATTTAAATGAAGAAACATTGGTTAAAGTCACTAGTTATAAAGCATATAGGTCATATTACATAGCACAGTCATTCCTAGCAGCAAAGAAATGGACAGAGACTATAGCATTATATGAGAAAGTTTTAGGATACGCCTCTACAGCATTAACTGGTTTTAAGAAATTTAAAACTGGGTCTATAGAGACGATTTCTGGTTTAGAGGAGCTAGTCAACAGAGTTAATGGTGAAAAATATTCGTGTCATGCCAACAGTATACTGGATATAGAATCAGTTACGGACCAAGTTGCTGATATTAGTCTCATTAGTAAAAAGCCATTGATTGACAGATTAGATGACTATGTGGAGGATAAAACAGTCACCACCAAGAAACCTAACCTGATTAATTTCCCACCAGACTTTGAACCTATACCATGTCGTCCATTGTTCTTTGATTTAGCATTGAATCACATAGATTTCCCATCACTAGAAGATAAGCTGGAACAGAAAAAGGCTGCAGGAGGAATTACAGGAATGGTCAAAGGATGGTTCTGGGGAGGTGGTAAAAAATAAACCAACCATCATCATAAATGTGCAAGGGAGTTAACTCAATAGGAAAGGGGGAACAACTCTGAGAAATTGAAAAAAAAACTATCTTGGTGATGATATAACATTGTTGAATAGAATAAAGAAAGTCAGGACAAAATTGGTGCAATTTACTAAATTAATGCAAAAAAATTATACCAGAATACAACATGCCCCACATATTATGTATTTCTTTATAAGTTCTCAACTGATCTGATATTCCATTATGACAAAACGTTATAGTTGTTTAGTTTTAAAGAATATTATGAATATGTTGATAAATGTTAAACTTCCTGGTCTTATGTCTAAATAAAGGTTGTACAAAAGTGCCTTCATATCCAATATAAGTGATACATGTAGCTGCTAAAAATTATCAAATTCTATAAATGAAGACAAGTGCCAAATGGGTATAAGAGTTTATATATATATATATCTATTTATAATAAGATTAGAAATAAATTTTATACCGATTTAATAATTATAATTTTGGCTAAACAGGTACAGTTACAAACAGTGATTCAACAAAGATTGTATTACACATATGTGTAAACTTATTGGAGAGAAGTTGTTTTTATGAAGGGCTCAGTTTTATATTATAAGCACATGAAAGTTATCTATTACATATTTGCTTTCTTTCCTGTTTGAAAATAATTATTATGTTTTGCAAAAATAAGAAAAATAAGGTCATTTAAAGTAAGTTGTTAGGGAGTGTAAAATGCATTTTTTCTTTAGCTCAAAACAAAATAATGAGGGAATCTGCAAGAATTTTGTTTTTGTAGAATCTCAAAATGTATTTAATTTTGATAAAGAATTGGGATGGTTTCTTTCAGAAACACTTATATGTGTGCAAACTGTTTTATCATCATGTGTCTGGTTATAAATGTGTTCAGTTGACAAGCTTTACTATCATTAGTCCTTTCAAATGATTCTTGACTGACTGGTAATTAAGGAATTACAGATGTGCACTTTCTAATGATGAAATATATGCACAACTGTAAACTTAAATGTTGTAGACTTAAATTTCTAATTTATAATTAAGTAACCATTAAATATTCAGATCATATCTTCTTTTTCTACTTTATATGTAATTATATTATACTTGTTGTTGAT

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF16969	SRP68	RNA-binding signal recognition particle 68	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011990	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR026258	Family	Signal recognition particle subunit SRP68	Interproscan
IPR038253	Homologous_superfamily	SRP68, N-terminal domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12860	SIGNAL RECOGNITION PARTICLE 68 KDA PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0005047	Molecular Function	signal recognition particle binding	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005786	Cellular Component	signal recognition particle, endoplasmic reticulum targeting	Interproscan
GO:0006614	Biological Process	SRP-dependent cotranslational protein targeting to membrane	Interproscan
GO:0008312	Molecular Function	7S RNA binding	Interproscan
GO:0030942	Molecular Function	endoplasmic reticulum signal peptide binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K03107	SRP68; signal recognition particle subunit SRP68	-	Protein export	ko03060	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_5539-1.28 global RNA-seq network