Gene detail

Detailed information of Bpl_scaf_5538-26.16 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_5538-26.16	DIHYDROLIPOYLLYSINE-RESIDUE SUCCINYLTRANSFERASE COMPONENT OF 2-OXOGLUTARATE DEHYDROGENASE COMPLEX, MITOCHONDRIAL-RELATED	Bpl_scaf_5538	2624078	2650701	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Bpl_scaf_5538-26.16

AGGCAAGTCAGAGTATAAGAGTAAAGGGAAAACATATCTGCTGTTTATCACTATGTAGTAGGAATACACAACTAGAACCTTCGAACAAGATTTCAAAAAAATTTAGTTCCACCTGCCAGATTATATTTAAGAGAAATTTCCATATATCAAGTACTTATTATGATGCAGTTCAAATTGTCTCAACACCAGCTTTTGCTGATTCGATCTCTGAAGGAGATGTCAAGTGGGAGAAGGCGGCTGGAGATTTTGTAAAGGAAGATGAAGTAGTTTGTGAAATAGAAACAGATAAGACATCCTTAGCAGTTCCTTCCCCTAAAAGTGGAATTATACAAGAAATATTAGTGGAAGATGGTAAAACAGTAGAACAAGGCACTCCATTGTTTAAGCTAAAATTAACAGGTAAACTAAATAACATGGACCTGGAGAAGCTGCCTCAAAACCTACTCCTCCAGCACCAGCAGCTAAATCAACACCATCACCATCAAGTGGTCCTATCCCTACAACACCTCCACCAGTTCCACCTCTACCCAAGGGTCCTATTAGTACTACACCTTTAGAATCTATTAAAGCTACACCAGCTAGTTATGTTGGTACTGGTGCACCATCAGGTGGGAGGACTGAAACAAGGGTTAAAATGAACAGAATGCGGCAGAGAATCGCTCAGAGATTAAAAGATGCACAAAATACATGTGCTATGTTGACAACTTTTAACGAGATAGACATGAGCAATATAATGGACATGAGAAATAAATACAAAGAACCTTTTCAAAAAAGATATGGACTTAAATTGGGCTTCATGTCAGCTTTTGTAAAAGCTTCAGCCTTTGCTCTTTTAGAACAACCTGTAGTTAATGCTGTGATAGAAGATTTAGAAACTGTTTATAGGGACTATGTTGACATTTCCGTAGCTGTTGCAACGCCAAAGGGTTTAGTGGTGCCTGTTATACGAAATGTAGAAAATATGAATTATACAGATATAGAAAGATCTATAGCAGAACTAGGTGAAAAGGCAAGAACTGGAAAGTTAGCAATTGAAGATATGGATGGAGGAACATTTACAATCAGTAATGGTGGTGTATTTGGCTCTATGTTTGGTACACCTATAATTAACCCTCCACAGTCCGCTATTCTAGGAATGCATGGAATTTTCGATAGACCTGTTGCCATAAATGGGAAGGTTGAAATTAGACCCATGATGTATGTAGCTCTTACGTATGATCATCGTTTGGTAGATGGCAGAGAAGCTGTCATATTCCTCAGGAAAATCAAAGCAGCCGTAGAAGACCCAAGAATTTTATTGTTAGACTTATAACATAGTCCTTAGATATTTCTATGTCAAAGGGGTCATGTCAAAATGTTAATTTGTCCAAGAGACTGTTTATGTGTATTAAATCTATTTATTGCAATGTTATTTATATTTAATTGGAGTAGACTATATATATGTTGAAATATTCTAGCATTAACCCCTTTATGTCTCCAGCATATTATAGATCTACTTTAACAATCTATATTGTCATAAAAACAAAATGGATTTACAAAAAAAAACAGAATTTTTTTTACGTTGAATAAAAATATTAAGTACTTGCATCGCACTCAGTCATGCGGTTCTCTATCGTGTTTAGACTCTTTGGCAAATTTTGTTTGTTTGTTTACTTCAATAAATATATTAATTATTTACCTCTCGCTTAGACATGATGACCCATTGTCGATTTTAGCTATCCTGTTTAGGCCCCTTGGTTTTGATGCTCTGAAGGGCTTTTAAATTATTTAGTTTTCAAGTCTTTTGTCGATGAGTATACCTAATGAAGTTTATTCTAGAAATGTGTCAAAACCAAATTTCTTTCTATTACACTTTACCAGGATTAACATGACTTTTTGGGGGGGGGGGATTTGTTTTATTCTGTCATAAAAGGATACAGATTTTTGTTTGACACCACATAGTCATAACAGTTTGTAAAGTTTTAAATTCTTTTTTTTACTGCGACAAGAATATCCATTACTGTTTGTTATAGATCTGGATTATTATGATGTGCTGTATGAAGTTAGATGAATGAGTTGCCAGAACATTAAATTGAGAAAGT

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00198	2-oxoacid_dh	2-oxoacid dehydrogenases acyltransferase (catalytic domain)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001078	Domain	2-oxoacid dehydrogenase acyltransferase, catalytic domain	Interproscan
IPR006255	Family	Dihydrolipoamide succinyltransferase	Interproscan
IPR023213	Homologous_superfamily	Chloramphenicol acetyltransferase-like domain superfamily	Interproscan
IPR050537	Family	2-oxoacid dehydrogenase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43416	DIHYDROLIPOYLLYSINE-RESIDUE SUCCINYLTRANSFERASE COMPONENT OF 2-OXOGLUTARATE DEHYDROGENASE COMPLEX, MITOCHONDRIAL-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004149	Molecular Function	dihydrolipoyllysine-residue succinyltransferase activity	Interproscan
GO:0005739	Cellular Component	mitochondrion	Interproscan
GO:0006099	Biological Process	tricarboxylic acid cycle	Interproscan
GO:0016746	Molecular Function	acyltransferase activity	Interproscan
GO:0045252	Cellular Component	oxoglutarate dehydrogenase complex	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K00658	DLST, sucB; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase)	EC:2.3.1.61	Carbon metabolism	ko01200	PMID: 28812709
			Citrate cycle (TCA cycle)	ko00020	PMID: 28812709
			Lysine degradation	ko00310	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_5538-26.16 global RNA-seq network