Gene detail

Detailed information of Bpl_scaf_5537-1.5 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_5537-1.5	SCC1 / RAD21 FAMILY MEMBER	Bpl_scaf_5537	143747	168000	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Bpl_scaf_5537-1.5

ATGTCAACCGTTTTATTTGGTCCAATGCTTCCATTGTATACAAACTGTGATTTAAACCAGACCGTTAAATTGGCGCTTAGGACATCTGGTCATCTTCTCCTTGGTGTTGTCAGAATTTATTCTAGAAAGGCGAAGTATTTATTGGCTGATTGTAATGAAGCATTTGTGAAAATCAAGATGGCATTCCGACCAGGAGTTGTTGATTTACCAGAAGAGAACAGAGAAGCTGCTGTTGCTGCCATCACACTGCAGGAAAATTTCCATGACTTTGATACAACTTTGGCTGATCTCAACGATTTTGATGTACAGGCCCAGTTTTCAGTGAACCAAAGTCGTCCAGAAGAGATAACAATGACAGAAGATCTTTCTAGTATTACCTTTGTAGGAGATGATGGATTTGGTGATATTGGATTTGATGATCGAGAAATCCTGAGAGATGCATCATCCTTTGAGGATTCCTTGTACAAACAGCCTGACTTGTCCCACGAACAACCGATTGAAGAAAAGACACTTAACGAGAATGCCACTGAAAAACCTATGGATGTAGACGATGAAATCCAGGCTCCGATGGACAATGACTTGGGGCCTGTGGATGGAGGATTCATGGATGCAGATGATGATGATGACGACGATGATGATGGAGGCTTTGGAGGAGGTGTAGATCAAGAATTCTTTGGTGATGAAGACTTCATTAGTTCTGGAGGTCTATTTGAAGATGCCCCAGTTGTTGCTGATGTCTCCATACCACAAGTACCGGAAATAGAACCAGCTACTTCAAAACCAACAGATGAAAACATTTCCAAACTTCCAGATGAATCGGAACCAGCACAGCCCCAGACAACATCTATGGCTAGTATAGTAGGTGCAGCAGGGGAACAGACTACTTTAATCAACAATGAAGAAGAAGCTTTTGCATTACCTCCCTTAGATGCTACTATCTTCCCAGGTACAGAAGGCAAAAAGAGAAGGAAACGTAAACTGATTGTTGATGAACAGAAAGGATTTCCTGGTGAAACAATGAAATTACAGTTATCAGATACATCAGACATCATTTCCACATTAGACTTGGCACCACCTACAAAGAAATTGATGCATTGGAAGGAAACTGGTGGTGTAGAGAAATTATTTTCCTTACCTGGCAGAAGTATTGTATCCAAAGTCAATTCAAAGTTATTTTCAAGAAATCTGGTAACAAAGCAAATGAAGGAGGATGAACCAGAGCAGGACTTGCTGGAATTAGATAATCAACAAGAATTGCCTAGAGAAGTTGACAAGTCACATGACAAAACACGTGAAATAAGTACAATATTAGAGGAACCATCACTTTTAGAGGTTTCAGCGAGATCACGGAAGTCTGACAGACATTCACATCAAATACCAGAAGGACAATCTATACTAACACCTCAAACGCCTGTTGTACAGCCACCTCAGACACCTAACATACAACCTGAGGAACCATCTAATGCTCAGGACTTGTTAGTCAATACATTGACGGAAGCTGAAGTTCCTCAGCCTCATTTTGATCAGTTTGAAGATCCTCCATCTATAGCACCGTTTTCTGTTCCACCTCCGTCAGTTCCTCCTCCATCTGTACCTCAAATGGAAGCTCCAGCTTTTAAAGCAGATGAAGATTTGGAAAATGAAGTTATGCCAGAAAATGAAGAGCAAGAAGAAAAAAGACTTACAAAACGAACACATCAAATGCAGCATGGTTTGGACCTGGCATTTAGATATAATAATAGACTTAGTTTTGCGGACATGTCTCGAAACCTCTACAAGAAACAAGCAGCATCTCGGTTTTATACACTTTTAGTTCTTAAAAAGTTTCAGGCAGTTGAAGTTAGTCAACAAAAAGAGTTTGGAGAAATTTGGATTAGTAAAGGTCCTCAATTTGGCCTTGTGTCGTAGATGTCATTTGTACAAGGAGAAAAATCTGCTTAGCATGCTGCCAAAGTGTGACCTATTCCAATATACTATTTCTGGGGAAAAACGATCTGAAAATGGAAAACATAAACGGCTGTAGAAAAAGTATATATTATAGATCATATTGATGATTTTAACAGATTCTTTTTATACTTATTTTACTTTGTATAATACAAAGTTTTAGTTATAAGGGATTATTGTTTTTAAGAGACTGAAAGGAATGAACAATATTAAAGATTTCATTTAGTATGATCTGAAAATTGTCTGCAAGATTATATTCTTTGACACCGGTTGAAATGCAGACACATAGTCAGTGGTTGCAAGTCCTCTCCAAACAAGTCCATTGGCTTTTTATATATGACTGGAGAAAAATCATATTTCGAGTTTTGTCATTTTAGATGTCAAACAAGAGGCAGCATACTCCTGGAAAATGAGAAATGGTGATCTCCACAGAATTATACAACATTGTTGATAGCTGTTGAAAGCAGGCTGCTTTTAAATGTTATTTATGAACAGAAAGAACGAAAGAAAGAAAACGATCATCATCTTTCCTTTTTTCTAGCAATCAATTCTTGTCCACAGTCCTTAAAATACCCCCCAAAAAATGGGACGTGCATTAGAAGATTTTATATTTCTATTGTTATTTTTGGATTGGTTCAATAAAAACCTATTCTTCTGTAGACACTGTGCAATTGCAACTCTTATATCAACATAATAGAGTTGGATACTATTTTGAGCATTTTGTCCTGTTCCCGGGAAGTTACAAATAGTTACAATACCATGGGGGGGTTGGAATAAAGAAATCTTTCAGGTGACAAGTATCTTGATGAAAAAAATATTTATGCTAAACAGAATAAAATAGGTTGACGACTGTGTGGACAGCATGCACATTTATATAGCTGTAAAATTATTGAAAAAAGGGCAGCTTTTTATGTTCTGTCGTTATATAGTATATATTGTTATTTGTTCTGTTGTCTTTATCTTGTGTCATTACAACCATTATTGTTAAAAGGTTTTACATGTCAGGGTTCACGAAATTGCATATGGGTTTGGTGGTCCTAGTGAGAAAAAAATGTCGGTCCTCGATAATTTTCTATTGCAAAATACCAATCTAATGTCAGTCCTTAGCAAAATCTGCCCAAATTTTGTTGGTCATGTCTGACAGGACTGACACATTTCGCGAACTCTGACATGAATCTGAAATGGTCAAAACCGTTATAAATTGATAAACCCTCTGTTAAGTAGTGTATTGTTGTATAGATAGAGATTTTGTTTATTACTTGTTATGGCAGGGAACAAACCCATTATTTTCTTCGGTTAAACCGTTCATCAAATAGGCATTATGACAAAGTTGATATGGTAAGAACAGTCTACACAGCAAGACAGATAAATGTGCAGTGTGCTACAAGTTGATTGGTTTTTTGAAGGATTAATTTTTTTGTGGAGTTTCAATTGATCCAGAAAAAATTTGTTCACTGAAAATTCTATGGGCAATATTTAATTTCATCTACTGGATTTGAAAAGTACATGTTGGACTTGCATTTGTATATGTTGTAGTCATGATCTATTTATACAATAAAAACGTAGGTATCTGATTTAGTTTGGAGGACGCGGTTCTGGAATAACCATCAGATACGCTAAAGTCAAGAGATTGGACATCTGCGCTAGCCAAGGGTTACGACCCGCTCCTCTTCTCTCCACCCTTGGCAGGTTAAGTCGGAATTTCGTGTCCTCACGGTTTATTTTTCTATTCGATGCAGGTGTGTGAGTGGCTGCGTCCAATCAAAATGCATCTGACAAAAGATCACATGTAGAGAAAGAAAAATGTAAACAATGGCGACATGTGGAGAAAACTGCCCCCCAAACACAGAAGAACAATATTTACAGAAACTTTTAAAGTATTTGCTCAATTAACTGAAGTCTTAGGCTACGTCCCTTCGAACAGGTAATAGTACAACCGTTCTCATTGGTTGATAAAATATGTAATGCAAATGGGCTGAACTTCATAAATCCGCTACAGGGCAATACGTGGGAATTACAAAATTCTGACTTAATCTGCCAAGGGTGGAGAGGAGAGGAGCGGATCGTGACCCTTGGCTAGCGAAGACCAGTTAATTATTAAAATCTGTGGGAGCAATACAACCAAAGGGCCGTCAAACAAAAATGTGTGGTTCCCGTTACATTAAAGTAAAAAACAGGGTAGGTAGGTTGGGATTTTATTTTATTTATATATTATTATTTTTTTTACATTTATTCTATGGGAGGGACATTCTAACTTAAACAGTGTTTATTGCAAAATGGCTAAAAAAAAAAATTAGGGTAGGTAGGGTAACTGGAACCACACCTATTTTTTTATTTGGCCTAAACATGAAAGTCACCTATGCCTGAGGGTGGAGAGAGAACTTGGTTTTAATGTGTAAAGAAAAAGAATATATTAAAACATGTCATAATTGTATTTCATGTACTGTAACCAAAGACTACTGCAAACACCTTTTAAGAACAATGATGAAAATACTGGTTTGAAAGGAATTGTTTTTAATTGTGCAATTTTAAAATGAGCCATTATCTTGTTCAAATAATTTTATTTTCCATGTTTAAATGCATTTCGTGTTCAGACATTGTTTTACATCTATTTTTATTTTTCATGTTAGGCCATTCAAAATTAATTTCTTGTTTTTCAGCCTCACTTGCTCCTTTGGTGAGATATTTCACCTTGTAATTGTCTTCACTTTTGTGTCTGTGAACGTAACAGAAAGTATATTCTGTAACATTGGATGTTCCTTAGAAAGTTTGTGTTTTTCATATCTCTAATTTTGTGACTGCTAGCACATCGATTGAACGGAGGCTACTATTGTCACCTGATCTTGACTTCAGTTTTTAATAATTGTTGAATTCACTATTAGGTCAGTTTCCTGGTGATTCTAAAATATTTTGTATTTCAACAATGCCGAAAAATCTTTGATAAAAAATATTTCAGCCTGTCATTTCTTGACTATGACCTCATATACATGAAGCAATCGATGTGTTACATAATTTCAAAAATGATAATAAAAAGTTATTGTCCCTAAAATGACAAATTTTACTTTGAATTTCATTTAAAACGAAAATATAACATGATGCAAAACTTGCTTTGAATTTCATTTAAGATGAAAATATATCATGGTGTAAATTTTTAAGCAAAAATCTGAAGAACATGATATTGAATTTGGTATGGCCTGACTTATTTTATGTGTCACCGATTGTTTGTAACTAGTTTATAAACAATTTTATTGTTGCAACATCACAGTAATTCATTGTATCATCA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04824	Rad21_Rec8	Conserved region of Rad21 / Rec8 like protein	Family	Interproscan
PF04825	Rad21_Rec8_N	N terminus of Rad21 / Rec8 like protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006909	Domain	Rad21/Rec8-like protein, C-terminal, eukaryotic	Interproscan
IPR006910	Domain	Rad21/Rec8-like protein, N-terminal	Interproscan
IPR023093	Homologous_superfamily	ScpA-like, C-terminal	Interproscan
IPR036390	Homologous_superfamily	Winged helix DNA-binding domain superfamily	Interproscan
IPR039781	Family	Rad21/Rec8-like protein	Interproscan
IPR049589	Domain	NXP-1, middle HEAT-repeat binding domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12585	SCC1 / RAD21 FAMILY MEMBER	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003682	Molecular Function	chromatin binding	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0007062	Biological Process	sister chromatid cohesion	Interproscan
GO:0008278	Cellular Component	cohesin complex	Interproscan
GO:1990414	Biological Process	replication-born double-strand break repair via sister chromatid exchange	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K06670	SCC1, MCD1, RAD21; cohesin complex subunit SCC1	-	Cell cycle	ko04110	PMID: 28812709
K06670	SCC1, MCD1, RAD21; cohesin complex subunit SCC1	-	Cell cycle - yeast	ko04111	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_5537-1.5 global RNA-seq network