Gene detail

Detailed information of Bpl_scaf_55356-1.4 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_55356-1.4	COLLAGEN ALPHA	Bpl_scaf_55356	101775	131868	+

Gene Structure

More details in Jbrowse Sequence

CDS

Bpl_scaf_55356-1.4

ATGTGTCCTACACTTAATCACCAGTCAGTAGCATCTCTGTACTCCATGTGTCTTACACTTAATCACCAGTCAGTAGCATCTCTGTACTCCATGTGTCCTACACTTAATCACCAGTCAGTAGCATCTCTGTACTCCATGTCTCCTACACTTAATCACCAGTCAGTAGCATCTCTGTACTCCATGTGTCCTACACTTATTCACCAGTCAGTAGCATCTCTGTACTCCATGTGTCCTACACTTAATCACCAGTCAGTAGCATCTCTTCCATGCTCGAAGTCTTGTGGAGGAGGAACGCATTACAGAACAAGGACATGCTCTAGCCCACCCCCAGCTAATGGTGGAAAGAACTGTGTCGGATCCGCTAAAGATACTCAACCCTGTTGTGGAGTTGTACCAGCTGACATAGTATTCATCTTGGATTCATCTGGAAGTGTGGGTCTCCCCAATTTCAAAAAGATGTTAGATTTCGTCAAGGGGATGGTTAATGGTTTCGACGTTGGACCAACTGGAGCACATATCGGTGTTGTCACTTTTAGTTCTAAACCTCATCTTGAGTTTCATCTGAACAAATATACTGATAAAGCAAAGACAATCCAAGGAATTTCCAACATCCAATATATATCTGGAGGAACAAATACTGCAGATGCGCTTAAGTATGCACGTCTAACTAGTTTTCTAACTGCCAATGGAGCCAGAGGCGCAGCTTCAAAAATTGCCATTGTTATCACTGATGGAAAGTCCCAGTCACCCCCCGCAACTGCTGCTGAAGCACAGAGACTTCGGGATCAGGGTATAACTGTCTTCTCTGTTGGGGTAGGATCAGGTCCAAATTTGCCAGAACTCAATTCTATGGCTACAGATCCTGATAACCAGCATGTTTTCGTTGTCACAAACTTTGATGCATTGAAACAGATCAAGGGAACACTAGCACAGAAAGCATGCGAAGTCAAAGCCACTGCTAAACCACCAGCTAAAAATTGTGGTGCCAAGGCAGATATCGTTTTCCTCTTGGATTCTTCTGGTAGTGTTGGATCCACAGATTTCGGCAAGATGTTGAAATTTGTCCAGGGTGTTGCAGACAAATTCACCATTGGACCAAATGATATCCAAGTTGGAGTAGATACATTCCAGTCTTCAGTTAAAACACAATTCAACATGAACCATTACAAGGATAAAAATGCCCTTAAAGCAGCCATTGGAAAAATAGCCTACCATGGTGGAGGAACCAATACTGGACCAGCCATTAAATATATGACAACTGATAGCTTTAGTGCAAAAGCAGGTCACAGAACTGGCATTCCAAAAATAGCAGTTGTTATTACGGATGGTAACTCCGCAAACAGAGCAAACACTTTCGCCGAGGCCAAAAAGGCACGTGACAGTGGAATACAGGTGATTGCTATTGGTGTTGGTCATGGTATTAACCAGAAAGAACTGGAAGGAATTGCTAGCTCACCAAAGAGCCAGTATGTCTACAATGCTGAGAATTTTGATGTATTGAATACTTTACAGGCATCACTGTCGTCAAAGACTTGTGAAGATTGTGGTACTGTTGCAGACATTGTTTTTACACTCGACTCATCTGGCAGTGTCGGCAAAGCAAATTTTGATAAAATGTTGGGCTTTGTAAAAACATTGGTAAAAGGATTCAACGTTGGACAAAAGAACATTCGTATTGGACTTCAGACCTTCAGCAATAGAGCTACGGTACAATTCAACTTAAATAAATATCCTGACAAAGCATCAGTAATGAATGCTTTAAATCACATTCCATACAACTCTGGAGGTACCAATACAGGTACAGCTCTCAGAACTATGTACAACAAGATGTTCACACAGGCTAACGGTGATCGTCCTGGAGTTCCAAACATTGGTATCGTTCTGACCGATGGTCGTTCCAATAATCCACCAGATACTAACAAAGAAGCAGCTAATCTACACAAGCACAACATCAATGTGTTCTCTGTTGGTATTGGTAAGGGAGTTGATAATAAAGAACTTGGCACCATTGCTACAGATCCAGATAATACTCATGTCTTTACAGTCAGCAACTTTGACAAATTGCAACAGATTTCAGCTGGTTTCCAGGCCAGGACTTGTCAGAATATTCCACCTACTGCAGCAACATTTACACCCACTAAACAACCAACACCTGGTCAACAGGTAGATCCATGTCAGGATCAATTGAGCAACTGTCAGCAGTATGGAAAGGCATCTTGTACTGGACAATACACTAAATGGGCCCAACGAAACTGTGAAAGGTTCTGTGGTTATTGTTCAAGTAAGTTTATGTTGAACCAACGTAATGTTAAGGAGGATGTTACCCTCTGA

Transcript

Bpl_scaf_55356-1.4

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00090	TSP_1	Thrombospondin type 1 domain	Domain	Interproscan
PF00092	VWA	von Willebrand factor type A domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000884	Repeat	Thrombospondin type-1 (TSP1) repeat	Interproscan
IPR002035	Domain	von Willebrand factor, type A	Interproscan
IPR003582	Domain	ShKT domain	Interproscan
IPR036383	Homologous_superfamily	Thrombospondin type-1 (TSP1) repeat superfamily	Interproscan
IPR036465	Homologous_superfamily	von Willebrand factor A-like domain superfamily	Interproscan
IPR050525	Family	Extracellular Matrix Assembly and Organization	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24020	COLLAGEN ALPHA	Interproscan

Gene Ontology

GO terms	Category	Description	Source
-	-	-	-

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K06238	COL6A; collagen, type VI, alpha	-	PI3K-Akt signaling pathway	ko04151	PMID: 28812709
			ECM-receptor interaction	ko04512	PMID: 28812709
			Focal adhesion	ko04510	PMID: 28812709
			Protein digestion and absorption	ko04974	PMID: 28812709
			Human papillomavirus infection	ko05165	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_55356-1.4 global RNA-seq network