Gene detail

Detailed information of Bpl_scaf_55333-3.7 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_55333-3.7	DNA POLYMERASE 2 ALPHA 70 KDA SUBUNIT	Bpl_scaf_55333	340073	366485	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Bpl_scaf_55333-3.7

AAGAAGGGTTCCTCAAACAATAAGACATGATATTTGGAGAAAAATCGTTATATATGAAAAGAACATTATTGATATTTCGAACTATGGACAAATATTAGAGACTACATACATTACACTTTACAACCGGAAGTTGAAAAAATCGCGGGAAAGACAATATTGTCAACAAAACGAAAACACCACTGTATTATAAGAATGCCGTTTGTTTCAGAAGAAGAATTGGCAGATGAATTTAGTGTATTTGGTTTCGAGTTTGATAGTCCCCAAATTATAGAGAAATTGCAAGCATTGTGTGTACAGTATAACTTTGGTGCAGAGAAAATCTCCACAGAATGGGTAGCTTTTGCCAGTACACACAAAGGAATAGGAATGACAGTAGACACACTGGAGCAGTTAGATAGAGAGAGACTTACAAAGAAAGGTTCAAGGACACCTAAGACTCCAGCCAGGAAAGTTGTAAAACAAGAATATTACGACATTAATACCATAGAAGGAGGTGTGGATGAAAATGAAGCAGAAAATTTATATAATGCATATTCAGCTACACCATCCTCAAAGAAAGGAACAAATCAACAGAAAAGACAACTAACTCCAGACAATCCACCTTTAAAAAGATTTACCAATAATGTCAGAAGTCCTATGGTTCCATTTTCTCCTGCCAGTTTTTCTCCAGCAGGGGTAAATACATCTAAGAAATTTAGTTCAAGGACGAATGCTGGGGATGTAGTTGCTTCTCTTGGTGTTACTGACAATACAAAATGGCAGGGTCAAGGTCAAGCTTGTTCAATCCAGCTTTATGATGAAGAAGCCAAATTGACATCTAACTTCAAGTACATGTTCCAGAAACTAGCTGAGAAAGCACATGTTTTAAATGATACCATTGATTACATGTCAGAAAGACTACAGAGCCACTATAACATAGAAGAATTCTCACATGTGGCAGTTCCTATGCAGGAACCAATAACTGTGGCTGGTAGAATCTGTTGTGATAGCAATGGTAAATTAAATGCTAAGTCTGTCCTCTTGGAAGGCTCCAGGGATACCTCAATGGGGAAGTGTATACCCTTAGACTTGACAGAGCTTAAACAATATTCAATGTTTCCTGGTCAGTTGGTTGCCATGGATGGTGTAAACAATACAGGACAGAAGTTAGTTGTCAACAAATTGTATGATGGTGTCCCACAGAGTCTTCCTGAGATAAATATCAAAACAGAACCAGGATCTGAGCATCTAAGTGTTTTGATTGCAGCAGGTCCATTTTCTACATCAGACAATTTATCATATGAACCTCTCAATGACCTGTCTAAGTATATGTCTAGAGACAAACCTGATGTTTGTATTCTGATTGGTCCATTTGTTGACATGAAGAATGAGCTAATAGAAAAAGGAAGTTGTACAATGACATATGAGAAGATTTTCAATGAACAATTAAAGTTCATAGGAACAATAACAAAAAGCATTGGTTGTCAGGTGATAATTATACCATCATACAGAGACATACATCACGACTACGTGTACCCTCAGCCTCCTTTTGATGCCAGATTACAAGATTTTAAGCATATTCACATGATGCCTGACCCCTGTACTGTAACCATCAATAATGTAGTATTTGGTATAACGTCTACAGACATACTGCTGCATCTTGGATCAGAAGAAATATCATGGAATCCTCCAGGAGCTACCGACAGATTAGGAAGATTAGCACAGCATTTAATTACACAACATAGTTATTACCCCCTGTACCCTCCCTCAGAAGAAGTTAATATTGACTTTGAAACACTTGATACTTATGGAACATTACCAGTCACTCCTCATGTACTAGTACTGCCATCTGATTTGAAACAATTTACCAAGGATTTACATGGCTGTTTCTGCATCAATCCAGGAAGGGTGGCCAAGGGACAGATTGGTGGATCATATGCCAGAATGGTGATTAATGTAAAAGACCTTAAAAGTCAGTCATCTATATTACAACACACGGCAGCTCAAGTGTTACGTGTTTAATAAAAGACAGAATGGTGCCTATAAAAATATTAATAAATTGTATTTATAAAAAACTATATTGGTTGTTTGGAGTTTGTTTTTATCTGGACAAAATAATTTTGGATACATATAAAAATTGAGTCTG

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04042	DNA_pol_E_B	DNA polymerase alpha/epsilon subunit B	Family	Interproscan
PF08418	Pol_alpha_B_N	DNA polymerase alpha subunit B N-terminal	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007185	Domain	DNA polymerase alpha/delta/epsilon, subunit B	Interproscan
IPR013627	Domain	DNA polymerase alpha, subunit B, N-terminal	Interproscan
IPR016722	Family	DNA polymerase alpha, subunit B	Interproscan
IPR043034	Homologous_superfamily	DNA polymerase alpha, subunit B, N-terminal domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23061	DNA POLYMERASE 2 ALPHA 70 KDA SUBUNIT	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0005658	Cellular Component	alpha DNA polymerase:primase complex	Interproscan
GO:0006260	Biological Process	DNA replication	Interproscan
GO:0006270	Biological Process	DNA replication initiation	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K02321	POLA2; DNA polymerase alpha subunit B	-	Purine metabolism	ko00230	PMID: 28812709
			Pyrimidine metabolism	ko00240	PMID: 28812709
			DNA replication	ko03030	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_55333-3.7 global RNA-seq network