| Gene ID | Annotation | Scaffold | Start | End | Strand |
|---|---|---|---|---|---|
| Bpl_scaf_55285-3.4 | AUTOPHAGY PROTEIN 5 | Bpl_scaf_55285 | 366521 | 382357 | + |
| CDS | |||||
| Bpl_scaf_55285-3.4 | |||||
| Transcript |
| Bpl_scaf_55285-3.4 |
| Protein |
| Bpl_scaf_55285-3.4 |
| Gene family | Subfamily |
|---|---|
| - | - |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF04106 | ATG5_UblB | Autophagy protein ATG5, UblB domain | Domain | Interproscan |
| PF20637 | ATG5_HBR | Autophagy protein ATG5, alpha-helical bundle region | Domain | Interproscan |
| PF20638 | ATG5_UblA | Autophagy protein ATG5, UblA domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR007239 | Family | Autophagy-related protein 5 | Interproscan |
| IPR042526 | Homologous_superfamily | Autophagy protein Atg5, helix rich domain | Interproscan |
| IPR042527 | Homologous_superfamily | Autophagy protein Atg5, UblA domain superfamily | Interproscan |
| IPR048318 | Domain | Autophagy protein ATG5, UblB domain | Interproscan |
| IPR048939 | Domain | Autophagy protein ATG5, UblA domain | Interproscan |
| IPR048940 | Domain | Autophagy protein ATG5, alpha-helical bundle region | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR13040 | AUTOPHAGY PROTEIN 5 | Interproscan |
| GO terms | Category | Description | Source |
|---|---|---|---|
| GO:0000045 | Biological Process | autophagosome assembly | Interproscan |
| GO:0000422 | Biological Process | autophagy of mitochondrion | Interproscan |
| GO:0005737 | Cellular Component | cytoplasm | Interproscan |
| GO:0006501 | Biological Process | C-terminal protein lipidation | Interproscan |
| GO:0006914 | Biological Process | autophagy | Interproscan |
| GO:0006995 | Biological Process | cellular response to nitrogen starvation | Interproscan |
| GO:0019776 | Molecular Function | Atg8-family ligase activity | Interproscan |
| GO:0034045 | Cellular Component | phagophore assembly site membrane | Interproscan |
| GO:0034274 | Cellular Component | Atg12-Atg5-Atg16 complex | Interproscan |
| GO:0044804 | Biological Process | nucleophagy | Interproscan |
| KO | Enzyme | Enzyme ID | pathway | mapID | Source |
|---|---|---|---|---|---|
| K08339 | ATG5; autophagy-related protein 5 | - | Autophagy - animal | ko04140 | PMID: 28812709 |
| Autophagy - yeast | ko04138 | PMID: 28812709 | |||
| Autophagy - other eukaryotes | ko04136 | PMID: 28812709 | |||
| Mitophagy - animal | ko04137 | PMID: 28812709 | |||
| Ferroptosis | ko04216 | PMID: 28812709 | |||
| NOD-like receptor signaling pathway | ko04621 | PMID: 28812709 | |||
| RIG-I-like receptor signaling pathway | ko04622 | PMID: 28812709 | |||
| Longevity regulating pathway - mammal | ko04211 | PMID: 28812709 | |||
| Longevity regulating pathway - multiple species | ko04213 | PMID: 28812709 | |||
| Shigellosis | ko05131 | PMID: 28812709 |
| 1. Expression trend for Bpl_scaf_55285-3.4 global RNA-seq network |
Maintained by Dr. Jiajie She in Longjun Wu's Lab & Pei-yuan Qian's Lab and supported by Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou) & The Hong Kong University of Science and Technology
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