Gene detail

Detailed information of Bpl_scaf_55043-1.9 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_55043-1.9	RNA BINDING PROTEIN	Bpl_scaf_55043	87974	91430	-

Gene Structure

More details in Jbrowse Sequence

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24012	RNA BINDING PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0003730	Molecular Function	mRNA 3'-UTR binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0005829	Cellular Component	cytosol	Interproscan
GO:0008143	Molecular Function	poly(A) binding	Interproscan
GO:0008266	Molecular Function	poly(U) RNA binding	Interproscan
GO:1990904	Cellular Component	ribonucleoprotein complex	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K12891	SFRS2; splicing factor, arginine/serine-rich 2	-	Spliceosome	ko03040	PMID: 28812709
K12891	SFRS2; splicing factor, arginine/serine-rich 2	-	Herpes simplex infection	ko05168	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_55043-1.9 global RNA-seq network

TOP

Maintained by Dr. Jiajie She in Longjun Wu's Lab & Pei-yuan Qian's Lab and supported by Southern Marine Science and Engineering
Guangdong Laboratory (Guangzhou) & The Hong Kong University of Science and Technology
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