Gene detail

Detailed information of Bpl_scaf_55004-2.7 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_55004-2.7	PROLINE-, GLUTAMIC ACID- AND LEUCINE-RICH PROTEIN 1	Bpl_scaf_55004	245051	259613	-

Gene Structure

More details in Jbrowse Sequence

CDS

Bpl_scaf_55004-2.7

ATGGATGCATCCATTGAAAATGTGATTTCGAGTTTTAGAACAGAATTTTTAAAGAAGGACAAGCAAATTAACGATTTTAGATGTCTAATAGATTTAACAGATGAGAGCAAATTGTTCTCAATAGAGAAGAAAGGAGCTCTTCAAGAAATAATCAGCCATATTCATGGACGTCTAAATACATCAAAACACAGGGCAGAAGGTTTTCTTTTCCTTGACAAGCTAGTTGAGCAATGTGTAACCGAAGTGTTTACCCAGAATGCTTTAACCTGGATCAGATTCATTATACAGTGTTTAGAGTCCCATGATCCTCCAGAATTAAAGAATTTAGCCAGTAATATTGGATGCAGAATATTACCATTGACTGTCAACTTTACAGCTCTCAGTAAAGATGTTACAGGCATTTTACCGCAGTTATTATCAGTACTTCTGCCTGCCAATTCTCAGTGGTTACAGCCATCATTAAATCTCATTAATGTCTGTATACAGAGTTATCCTGGTCCATGTGGAGCATTCAAGGGAAAGATAGAAGCAATGTTAATGGATTTGTTTGTGGAAGTTTCAGTTCCTAAAGCAGCTATTACATCATACATTCTATTGGCTGGTTGTGGTGGAGGGGGAACCAAAGGGATGAAATACACAGGAGCATGGTTATACAAATGTCAACAGATACTATCAAGTCTCAATAACACAGTAGATTTGTTATATGAAGGGTTAAACATAACTGATACGAGTTCCAAGTCAGTCGTTCCTCCTTTACCAACTATAGAACTGCCAGAGCAACACACAGACAGATTTAATATACTTACCACATATTTTAGTACTTATTCAAAATGTCTACAAGAACTACTAAGTCGGCCATTTTCAGCTCCTGTGAAGATCCCCATCGATGAAATTATACAGATTATTCACAAGACATTGACTGTCAACAGTAAAATATTGCATAGCAGACCTTCCATGGAGAGATTGTTGTTATCAGGTTATATATCAACAATACACAAGGAAGCTGTCTTATGTCTACAAAGTCTGATATCCAGATGTAAATCTTTACTTCTGCCATATTCCAAGTCAGTTGTATCATTACTGGTACAAGAATTGATGTGGTCAAGGTTACCAGTAGTGTATGGTCAGAACAGAGCCTATAATTGTTTGAGACAGACAGTATATAAAACAGTGATACTTTGGTTACAAACCACACAGTCTTTCACAGAGACCTCTACTGAAGAAGAATGGCTCGTTCAGGAAATATTACACGATTCTAGACCCCATAAAGATAACATGAAGATGGATTCCAATAAAAACAAAAAATCAAGTAACTTTGAACCTCCTCCAGCAAAGAAGAAAAAGAAGGGAGGCTACTCAGATTTGAGCCATGGTATCAGTAGTCAAAGGAAAATAGACTTGATGTCCAACTCAGAACTGTCTGTGACAGCATTAGAAGCTTTGTACTGGCTACTGAGTACAGTTGGATGTCAACTCGAACAGAAAACTGTTCAGGAAATTCAAGAATTCATCATATCTGTTGCCATTACATTTAGAGGAAGAAGTAATTTTGGAATACCATATACCAATGATAGGTGTCGCCACAGACTACTGATGGTCATGCAAGTGTTTAATTTGATGCCCCATCCTACAGTATCCTCCATTTTACAACATTCTTTGTCAGTTCTCAGATGTACTGTACAGGATGACAGTTTATTGGTCTCGTCCTTCAGTACACAATCTTTAATTGTATGTGAGACACTTGTTCATGCCAGAGCACCATGCTTTCACAAGCCAAAGATAGTTCAAAGGGAGATAATCCAGGATATAACAGAAAATGGTCATCATGTTAGTGCTAATATCAATGGTAACAACACAGTGATGAAACTCAACGGAACACCATCTTTTTTTGACACCATAACAGATAAAATCATAAAAGACGACAAAAAATCAGAGAATTATGGCGCCAAAACTGACAGTAGTTTTAATGGAGGATCTGTAAAGGAGACTGCAGCTGAAAACTCGTATAAAATTATTGATATTTTCAGCAATACAAGATTAAATGAAATGAATGAAGGATGGAATAATTCTAAGCCTAACCAGAAGGAATCTATTCCTTTTTCTAAACTTTCAAGTCATACTTTGAAAACAGGCAGTTTAAATCCTTGTTCTGAATCATCAATAAATGCAAAACCAGAAATTTCAGAAAAAGAAGAGGGCATTATTCATAGTCAGTCACCAGAACAGCCACTAAAGAGTATGCCAGAGCAGCTGTCTGTGACAAATGTTGAAAACCAGACAATAAGTATGGAGGTAGACAATGAGGATATAGAGAGGGATGTGAACTCTACACCAGAGGCTGTTCCTCAGATAACATCAAGCACAAGGATAGACACAGAATGTATAGATAACACACTACAGGTAAGACAGACTGAATATTTTGTATAA

Transcript

Bpl_scaf_55004-2.7

CTGCGAGAAAGCAAGATGGATGCATCCATTGAAAATGTGATTTCGAGTTTTAGAACAGAATTTTTAAAGAAGGACAAGCAAATTAACGATTTTAGATGTCTAATAGATTTAACAGATGAGAGCAAATTGTTCTCAATAGAGAAGAAAGGAGCTCTTCAAGAAATAATCAGCCATATTCATGGACGTCTAAATACATCAAAACACAGGGCAGAAGGTTTTCTTTTCCTTGACAAGCTAGTTGAGCAATGTGTAACCGAAGTGTTTACCCAGAATGCTTTAACCTGGATCAGATTCATTATACAGTGTTTAGAGTCCCATGATCCTCCAGAATTAAAGAATTTAGCCAGTAATATTGGATGCAGAATATTACCATTGACTGTCAACTTTACAGCTCTCAGTAAAGATGTTACAGGCATTTTACCGCAGTTATTATCAGTACTTCTGCCTGCCAATTCTCAGTGGTTACAGCCATCATTAAATCTCATTAATGTCTGTATACAGAGTTATCCTGGTCCATGTGGAGCATTCAAGGGAAAGATAGAAGCAATGTTAATGGATTTGTTTGTGGAAGTTTCAGTTCCTAAAGCAGCTATTACATCATACATTCTATTGGCTGGTTGTGGTGGAGGGGGAACCAAAGGGATGAAATACACAGGAGCATGGTTATACAAATGTCAACAGATACTATCAAGTCTCAATAACACAGTAGATTTGTTATATGAAGGGTTAAACATAACTGATACGAGTTCCAAGTCAGTCGTTCCTCCTTTACCAACTATAGAACTGCCAGAGCAACACACAGACAGATTTAATATACTTACCACATATTTTAGTACTTATTCAAAATGTCTACAAGAACTACTAAGTCGGCCATTTTCAGCTCCTGTGAAGATCCCCATCGATGAAATTATACAGATTATTCACAAGACATTGACTGTCAACAGTAAAATATTGCATAGCAGACCTTCCATGGAGAGATTGTTGTTATCAGGTTATATATCAACAATACACAAGGAAGCTGTCTTATGTCTACAAAGTCTGATATCCAGATGTAAATCTTTACTTCTGCCATATTCCAAGTCAGTTGTATCATTACTGGTACAAGAATTGATGTGGTCAAGGTTACCAGTAGTGTATGGTCAGAACAGAGCCTATAATTGTTTGAGACAGACAGTATATAAAACAGTGATACTTTGGTTACAAACCACACAGTCTTTCACAGAGACCTCTACTGAAGAAGAATGGCTCGTTCAGGAAATATTACACGATTCTAGACCCCATAAAGATAACATGAAGATGGATTCCAATAAAAACAAAAAATCAAGTAACTTTGAACCTCCTCCAGCAAAGAAGAAAAAGAAGGGAGGCTACTCAGATTTGAGCCATGGTATCAGTAGTCAAAGGAAAATAGACTTGATGTCCAACTCAGAACTGTCTGTGACAGCATTAGAAGCTTTGTACTGGCTACTGAGTACAGTTGGATGTCAACTCGAACAGAAAACTGTTCAGGAAATTCAAGAATTCATCATATCTGTTGCCATTACATTTAGAGGAAGAAGTAATTTTGGAATACCATATACCAATGATAGGTGTCGCCACAGACTACTGATGGTCATGCAAGTGTTTAATTTGATGCCCCATCCTACAGTATCCTCCATTTTACAACATTCTTTGTCAGTTCTCAGATGTACTGTACAGGATGACAGTTTATTGGTCTCGTCCTTCAGTACACAATCTTTAATTGTATGTGAGACACTTGTTCATGCCAGAGCACCATGCTTTCACAAGCCAAAGATAGTTCAAAGGGAGATAATCCAGGATATAACAGAAAATGGTCATCATGTTAGTGCTAATATCAATGGTAACAACACAGTGATGAAACTCAACGGAACACCATCTTTTTTTGACACCATAACAGATAAAATCATAAAAGACGACAAAAAATCAGAGAATTATGGCGCCAAAACTGACAGTAGTTTTAATGGAGGATCTGTAAAGGAGACTGCAGCTGAAAACTCGTATAAAATTATTGATATTTTCAGCAATACAAGATTAAATGAAATGAATGAAGGATGGAATAATTCTAAGCCTAACCAGAAGGAATCTATTCCTTTTTCTAAACTTTCAAGTCATACTTTGAAAACAGGCAGTTTAAATCCTTGTTCTGAATCATCAATAAATGCAAAACCAGAAATTTCAGAAAAAGAAGAGGGCATTATTCATAGTCAGTCACCAGAACAGCCACTAAAGAGTATGCCAGAGCAGCTGTCTGTGACAAATGTTGAAAACCAGACAATAAGTATGGAGGTAGACAATGAGGATATAGAGAGGGATGTGAACTCTACACCAGAGGCTGTTCCTCAGATAACATCAAGCACAAGGATAGACACAGAATGTATAGATAACACACTACAGGTAAGACAGACTGAATATTTTGTATAA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08167	RIX1	rRNA processing/ribosome biogenesis	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR012583	Domain	Pre-rRNA-processing protein RIX1, N-terminal	Interproscan
IPR016024	Homologous_superfamily	Armadillo-type fold	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR34105	PROLINE-, GLUTAMIC ACID- AND LEUCINE-RICH PROTEIN 1	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006364	Biological Process	rRNA processing	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K16913	PELP1, MNAR; proline-, glutamic acid- and leucine-rich protein 1	-	Ribosome biogenesis	ko03009	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_55004-2.7 global RNA-seq network