Gene detail

Detailed information of Bpl_scaf_54972-5.2 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_54972-5.2	F-BOX/WD REPEAT-CONTAINING PROTEIN 5	Bpl_scaf_54972	480731	497267	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Bpl_scaf_54972-5.2

TTCCAAACATTTTACAGATTTAGATTACTAAAAAAAAATAGAAATGGTCGAGCTGTCAAAAGTTTTAAGTTTTATATCTATCTCCCCTGGTTTTGTTTGAACATGCCTCTACATTGTGTTGAGGACAGAAGGAGTCCAACAGAGATAGATGAAGATGATGAAACATGCCCTGGTATTTGGCAGCAGTGTCCAGATTCCATTCTTCTCCATATCTTCTCTTATTTAGAAGCAAATTATTTGACTACTGCCTCCCAGACGTGCAAGGACTGGAATAGAATAACAAATGATGAAAGTCTTTGGAAAGCTTTGATAGGCTACAAATGGGGTGTGAAAAATCAGAAGTTACCTCCCTTGAAGGAGAGCTGGAAATCGGAGTATAAACGTCTGGACTATCATACACCAATACATTTAAGTGAGACCTTGACTGACCATAATGATGAAGTTCTTCATGTCAGCTTCTCCAACAGTGGAAAATTATTTTCTACAACTTCTAAAGATGCCTCAATCAAAATATGGGAAGTAGGTGACCCAACAGTTTTAAAACACAGTAAGAACTTCAGAGAATTACTGGCTTGGGACTTTACACAGTTTTCCTGTTTTAACCAGATAGATAGCTTACTACTAGTATCCAGTGTAAAGACAACAACAGACTATATGGAGAGGAGAGGATATGTGGCCATTATTTCTGTTCTTAATGATTTCTGTATAATCCGTGTGGTGTCGATGGATCCATCCCAGTTGTTTGGAGCTTGGTTAGATAACAGAACATTCCTAGGAGGTTGTCTGGAGATTAGTCTAGATAGGTTTACTACAACTGTACAGATTGAGGCTTTTGATGTTTCTGAGGTTCCTGTATTAGATTCAAGTAATGAAGCTCCCATTCCTGTAGTTGAGGAAGGCACTGGTAAAAATCTGTTTACCTTCTGTAGTGAGACAGCTAGTCTGATTAAATTCCTAACTGTAGCTAATATACCTTACACATGCACTGATAGTAATGGACAACAATACTTCTGTGATAAATGTTCTAGTAGCCTTAGTATAGGCACAAATCCTAGAAAAATTCCAAGAAGAGATCAAGTTTTATTTACTTCTGACTTACAAAAACAAATTTCTTGTTCTTCTAGTTCTTCAAGTTTAGACAAGATTGAGAGTAATTCAAATGCTTCATGTTCTTATAGTTCAAGTAGTGCTGGATTTTCTGACAGCTTTAAACCTTTTAATGAACTATCGACATTATGTACTGAATGTCATGCGAGAAACTATAGTCGTAATTTAATTTTTGTTACTGGCGAGTTTGCCGTTGCATTGCACCAGCTAGGATTTAAAAATGTCTCACCATCAGTGATAGACAAAGCAATAAGTCCAATGGATAGTGATTCTTCATTGTCAACGGGAGAGAGTCACATGGTAGTTAATTTTAGTAACAATGATATACAACTTCGACCAATCAGAATATCTGACAAACCAGACAACTTGTTGGATTTATTTGGACATGTGACTGGATTATGCTTATCACATGATCACAGATACTTGTACTTGAACTGTAGACCATGGATTGGTAATGTAGACAGAACAGACCCATGGTCCACACCTGACCTTTCATCTTCGATCGAGGTCAGAGTAATTGACCTATGTACATTGAAGGATACAGGAATCAGATACCTAGGTCACAAAGGGTACTCACCATCAACAATGTGTTGTTTTGTGTTCTTAGATGTCAGTCAGGATTATGTTGGAAGTGGTAGTGAAGATGCCAAAGGATATATATGGGACAGACATTATGGTGTAAACCTGGCCACATTTGCCCATAACTATGGTGTAGTGAATTCTGTAGGATTTAACCCTACAAACCAGGAATATTTAGTCACTGTTAGTGATGATAGTAGCATTAAAATATGGAGGTCTAAAGCTTTAATGAAAGAATGTGGCCAAGTGTAACAAATCATTTTGAAATACTTTTAAATGAGGATCAAGAGTAAGAAATGGGTTTTTACATGTTAAAAAAGCAAACCATTATACAATGAAATTACTAGAATCACAAAATTTGCCCCCACAATGTTTTGTTATTAAGCCTTTATAGCATATTCTGTTGATTTAAGACGCAATAGGAAAATAGCTGTCTGATATTTTATAGCATAAATCAAATACATGTATGCAAATTTTACATTGGATATACCTAGCCTTAGGCTATTCAATTGTTTGTCTGGTACAAAAAAAAATACTTAAATTTTTCTTGTTACTTAAAAATACTCAATTGTTTATCGTGTGTTTATTATATTTTTTAACTACAATAATTGCTATTATAATGAATTTTTTTTTGTATTTTTGATTCTATCACAATAATAAAGATTTCTGTAGTTGTAAAAGTATGTTGATGTGTGGCTGTGCTAGATGAACTTTTTTTCTGTGCCCTAATTCTTGTCCATGAACTGACACTCTTAGCACTATATTGTTTGCATAATATATTGTCAAATTAGATTATGTGGGTATGTTTGTTTCAACTTTCAACAATATTTCAGTTATATCGTGACAGTCAGTTTTATTGGTGGAGGAAACCGGAGGACCCGGAGAAAACCACTGACCTGTCACAAGTTACTGACAAACTTTATCACAAAATGTTGTACACCTCACCTCGATCGAGATTCGAACTCACATCAGTGGTGATAGACACTGATTGCATAGGTAGTTGTGAATCCAACTACCATACGATCACGGCCACGACGGCACCTATTATCAAAATGGTATTCATTTTATAAACATGGAAATAAAAAAAATTTAAAATGCAAATATGTACTGTAATTATTCATATTTTTCGTCTTCCTAATGTTGTGACTTTTCTGTTTTGGAATTTTGCTATTTTTTTTTTATAGATTATCTTATTTTTCGACTTATGC

Protein

Gene family

Gene family	Subfamily
Ubiquitin Family	UBD\|Other\|Beta-prp
Ubiquitin Family	E3\|E3 adaptor Cullin RING\|CDC20
Ubiquitin Family	E3\|E3 adaptor Cullin RING\|F-box
Ubiquitin Family	E3\|E3 adaptor Cullin RING\|DWD

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00400	WD40	WD domain, G-beta repeat	Repeat	Interproscan
PF12937	F-box-like	F-box-like	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001680	Repeat	WD40 repeat	Interproscan
IPR001810	Domain	F-box domain	Interproscan
IPR015943	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR036047	Homologous_superfamily	F-box-like domain superfamily	Interproscan
IPR036322	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR042508	Family	F-box/WD repeat-containing protein 5	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR20995	F-BOX/WD REPEAT-CONTAINING PROTEIN 5	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0016567	Biological Process	protein ubiquitination	Interproscan
GO:0019005	Cellular Component	SCF ubiquitin ligase complex	Interproscan
GO:0080008	Cellular Component	Cul4-RING E3 ubiquitin ligase complex	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K10263	FBXW5; F-box and WD-40 domain protein 5	-	Ubiquitin system	ko04121	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_54972-5.2 global RNA-seq network