| Gene ID | Annotation | Scaffold | Start | End | Strand |
|---|---|---|---|---|---|
| Bpl_scaf_54922-0.6 | ZINC FINGER MATRIN-TYPE PROTEIN 2 | Bpl_scaf_54922 | 55522 | 63690 | + |
| CDS | |||||
| Bpl_scaf_54922-0.6 | |||||
| Transcript |
| Bpl_scaf_54922-0.6 |
| Protein |
| Bpl_scaf_54922-0.6 |
| Gene family | Subfamily |
|---|---|
| - | - |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF12171 | zf-C2H2_jaz | Zinc-finger double-stranded RNA-binding | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR003604 | Domain | Matrin/U1-C-like, C2H2-type zinc finger | Interproscan |
| IPR022755 | Domain | Zinc finger, double-stranded RNA binding | Interproscan |
| IPR036236 | Homologous_superfamily | Zinc finger C2H2 superfamily | Interproscan |
| IPR040107 | Family | U4/U6.U5 small nuclear ribonucleoprotein component Snu23 | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR45986 | ZINC FINGER MATRIN-TYPE PROTEIN 2 | Interproscan |
| GO terms | Category | Description | Source |
|---|---|---|---|
| GO:0000398 | Biological Process | mRNA splicing, via spliceosome | Interproscan |
| GO:0003676 | Molecular Function | nucleic acid binding | Interproscan |
| GO:0005681 | Cellular Component | spliceosomal complex | Interproscan |
| GO:0008270 | Molecular Function | zinc ion binding | Interproscan |
| GO:0046540 | Cellular Component | U4/U6 x U5 tri-snRNP complex | Interproscan |
| KO | Enzyme | Enzyme ID | pathway | mapID | Source |
|---|---|---|---|---|---|
| K12848 | SNU23; U4/U6.U5 tri-snRNP component SNU23 | - | Spliceosome | ko03040 | PMID: 28812709 |
| 1. Expression trend for Bpl_scaf_54922-0.6 global RNA-seq network |
Maintained by Dr. Jiajie She in Longjun Wu's Lab & Pei-yuan Qian's Lab and supported by Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou) & The Hong Kong University of Science and Technology
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