Gene detail

Detailed information of Bpl_scaf_5489-1.8 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_5489-1.8	HOMOGENTISATE 1,2-DIOXYGENASE	Bpl_scaf_5489	102601	129787	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Bpl_scaf_5489-1.8

AGTTGCAGTATATGTCAGGATTTGGCAATGAATTTGCAAGTGAAGATCCTCGATGTCCAGGTGCTTTACCAGAAGGACAGAACAATCCACAAAAATGTAAATATGGTCTGTATGCCGAACAGCTGTCAGGAACAGCTTTCACTGCACCAAGGGAATCTAACGAGAGGAGTTGGCTTTATAGAATCAGACCTTCAGCACAACATGAACCATTCAAACCGATGAAAAATTATCTATTAACTAATGATTGGAATCTAGTTCCACCAAATCCTAACCAGATGAGATGGCATCCATTTGATATACCAAATCCCAGCAAAAAGAAAGTAGATTTTGTTGAGGGTTTAGCAACAATATGTGGAGCTGGAGACCATAGGAGTAGACATGGAGTGGCTGTATACATATATACATGTAACACATCTATGACAGACAAATGTTTTTATAATTCTGATGGAGATCTTTTGATAGTTCCACAACAAGGAGGACTATTAATCACAACAGAATTTGGAAAGATGCAAGTAGATCCTAATGAAATTTGTGTCATACAGCAAGGAATTAGATTTAGTGTTGAAGTGTCTGGAGAATGCCGAGGTTACATACTAGAGGTGTTTGATGGACATTTTATCCTTCCTAATTTAGGCCCAATAGGGGCGAATGGATTAGCTAACCCTAGAGATTTCCTAACACCAACAGCATGTTATGAAGACAGAGAATGTGATTTTACAGTCATCAGTAAATACCAGGGGTGTTTATTCTCTGCTAAGCAGGATCATTCTCCATTTGACGTTGCTGCCTGGCACGGGAATTACGCACCATATAAATACAACCTAGATAATTTTATGACCATCAACGCTGTAGCATTTGATCACCCAGATCCTTCCATCTTTACAGTATTAACATGCCAATCATTAAAACCAGGAACAGCTATTGCAGACTTTGTAATATTTCCTCCTCGATGGAGTGTACAAGAGAAAACCTTCAGACCGCCATATTATCATAGAAACTGTATGAGTGAATTTATGGGACTTATTTGTGGTAAATATGAAGCAAAGGAGGAAGGTTTCCGTCCAGGTGGTGCCACATTACATAGTATGATGACCCCACATGGCCCTGATGCAGATTGTTTTGAGAAAGCATCAAATGCAGATCTTCAATCTCAACGCATTGCAGATGGTACAATGGCCTTTATGTTTGAATCATCTTTAAGTATGGCTATTACGGAATGGGCGAACAAAACAAAGGTTGATGAAAAATATCATGAATGCTGGAAACCACTGAAGAAGCATTTTAATGTTGATACTAATGATATAGATGGACCATCAAAAAAGCCAAAAAGAAAAAGAAAAAAATAGATTTTGAAATGATTATAATATAATCAGAATCTCATCTTTATAATTATAGACCAATGAACTTTACTTCTACATATAGTCAGTTGACAAGTATTTGCAATTTTCGATTTTTCTCTACACATTTCATATAAAACCACATTTGTAATCCACATTTTAGAAATTTTTCTGATTTAAACATAGCTTTTGGTTGAAAATGTATTATATGTGTAATATGGATTGGGATATGTGGAATTCAGATTTACCTTCAACTAATGAATGCATAAAATTTAAAAAAAATCAAAATGTAAACTTACATATTCATACTAAGAAAAATTATGGTGAATACTTAGGTGCAGTTCCGTCTTAATGCATGGGTATGATGGGCACATTCCTGGGGGCCCACAAGCATAGGGGTCCCATGCTAATCTATGTATGTGGCATTATGTCATTTTTTAATGTTTAATCACTGATTTTGTTGGAAGTACATGTACCAGTACAATCAATATATGTTTAATTTTATCGACCATTTGAATTTTTATTCCTATGAGTGGTTGTGTAGGTATGGGCTTATTCCTATGAGTGGTTGTGTAGGTATGGGCCTCAGTCCACTACTTTGCACGGGCCTATAATGCTGTTATACAGCCCTACTTAGATCCACCCGACTATTCCAATAATGTCAACCAACGAGAAGGAAAAACTATCGTATTGTATCATTGTCTTCATACTTTTGCTGCATTAATCAGTATATTTTTTATGATTTCAAATGTTATTACAAGGGAAAATGTAAACCAAAATACACTGCTTGTATTTGCTTTAAAAGTCTTTATTTTTTTATGTTGCCTTATATTAATATTTGACATAGTTAGGTGGTGCTGGTACCCAACCTCAGGGGTAGTCGCTACAGAAGGGTTTTATTTTATAACAGATATACTCTTATAAATCAAATTAGAACAATTTGATGATCAATTATTTATGAACTGACACCTTTATTTTATTGAATTCTATTGAAATCCATTGTTTGTTATATATTTATTGTAGTCCTTCAAATTGTTATACATTACTATTATTATAATAACATAGCAAATGTCATTTTCTTAGCTGTAGTTCAAAGGTAAAAGTATCAAAATGATGAATACATAGAGCAACAATTAAGAAATTATGAAAAGAAAGTTTAAACAGTGATAGTCATCAATTCCACCAATATCAACAAAATGAACAATCACCTCTCATCTTAGCTGAACTCACTGAACACAAAAAAGACCACGACATATAACATATGACTCAGTATTTTGATATTTTTACTTTTAAGCGTGGTGTAACAAATGACATTCTTTATGTTTTTATAATACATATTTTTATAGATCTCACAACATATTTTTGGTTTATTACTATTATTGCTTTATTTCCCTTTATTGGAAACCATTCCTTTAAAATGTATTGATATCAGAAGTGAATGAATGGATTAAAGATGTCCTCTTACTGAGAATACACGAGACATTTATGTTCATAAGTTTATATCTCAGATAAATTTCTTGTACTAAGCAAGAGAAAATCAAAAGAAAATTTGTTTGCACTGGTATTATATTATATTGTGTAACAAGGATGTAGATGGTCCTTGAATGTAGAGATAAATTTAGTGGCAACTTTTTTTAAAATCTTTTTTCACTTGTGTATTTGATGCTCTTGTCAACTGTCAACAGCTCATATTAATTTACCATAAAATTGTTCAAGGTTTTATTATCCCACAAATAACTAAAAGAATTCATTGTCTAGTCATTTTACAAATGCATGAAACTTCATTAGATAATAGATGTTAATGTATTTCATGATATTCACAAATAAAATGAATGCTGTGACCTACTTAACTTTATTTTTTGTTTAAGATAGTTCTAAAAGAACTCTCCTCAGTATCATCATCATGAATCTTTGTGAAGAGCAGATCTGAAACATGGAAAGTGATTATGTGACCTATATTTCATGGTTCACTAATTATTTTGGATAACCTTTCAAGTTTATTAAATTTTGGAAGAAATCTCACAAGTATAAAATATGTAACATTTTACCATCAACCAAGGATATGACATCAAATAATTTATAGTGTCATATGTCGCATGTAATTCGGGGCACTATGTATTGTTTCCAGTAGAAACTTGTTAACTGATTGCACATCTGCACATTAATTTAAATTTAGCAATAAGATGCTGCAGTGTTTTAAGAGATATTAATGATTGATATTCTGTCAATTTT

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04209	HgmA_C	Homogentisate 1,2-dioxygenase C-terminal	Domain	Interproscan
PF20510	HgmA_N	Homogentisate 1,2-dioxygenase N-terminal	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR005708	Family	Homogentisate 1,2-dioxygenase	Interproscan
IPR011051	Homologous_superfamily	RmlC-like cupin domain superfamily	Interproscan
IPR014710	Homologous_superfamily	RmlC-like jelly roll fold	Interproscan
IPR046451	Domain	Homogentisate 1,2-dioxygenase, C-terminal domain	Interproscan
IPR046452	Domain	Homogentisate 1,2-dioxygenase, N-terminal domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11056	HOMOGENTISATE 1,2-DIOXYGENASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004411	Molecular Function	homogentisate 1,2-dioxygenase activity	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0006559	Biological Process	L-phenylalanine catabolic process	Interproscan
GO:0006570	Biological Process	tyrosine metabolic process	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K00451	HGD, hmgA; homogentisate 1,2-dioxygenase	EC:1.13.11.5	Tyrosine metabolism	ko00350	PMID: 28812709
K00451	HGD, hmgA; homogentisate 1,2-dioxygenase	EC:1.13.11.5	Styrene degradation	ko00643	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_5489-1.8 global RNA-seq network