Gene detail

Detailed information of Bpl_scaf_54434-0.6 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_54434-0.6	SORTING NEXIN-8	Bpl_scaf_54434	44070	83790	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Bpl_scaf_54434-0.6

ATTTGGACAAAATGTCGGCGGATCTTACTTTCGGATCGGTGCCTCCATATTACAGGGAAATTTACGAAATACTCTGCCCCAATCAAGAACAGGTAGAGGAAGATATTTTAGTCCAACTGTTGCTAAAATCAAGTTTACCAAGTTCAACAATCACACAGATATGGGATTCGGTGGACAATAAGACAGGTTCAGTCAATAGGAACGGATTGTACAAGGCTCTAGCTCTGACAGCAATGGCTCAAAATGGAAAAACAATACATGATAAATTATTGGATAGTTATGCAGGCCAAGAATTACCAAAGCCATCTCTAGGAGACCTAAGTGATTTGAGAGCTTCTAGTGTTAAACTTAGACGAGAGAAACATCCTAATATTTTAGGATATAATTTCCGTGAGCTGTGTGATTTAGATGCGATCAAAGTAGAACTGGTACCAGAAAAGAAGGGAATCATCTTAAAACATGTGGAATATGAAGTTACTAGTCGGAACTACAAGACATCAGTCCTTCGTCGTTACAATGATTTTGTGGCATTCCAGGAAATGTTAATGACACGATTTCCATATAGACTAGTCCCTAGACTACCTCCCAAGAAAATGATGGGTGGCAATAGAGAATTTATAGAACAAAGACGAAAATCATTACGAAGGTTTCTCAACTTAGTATCACGACATCCAAAAATATATGATGATAAACTGGTTAAATTTTTCCTGACATTCAGTGGATCGGATATGACAAATAAAATAAAGGAAGTTTTCCGAGGAATTCCAGATGAATTTATGACAAGTAATTTAGCCAGTAAAGCTAAGGACCTTGTTCCCATGGATACACAACAACAAATACAGAACAGTAAAGAACATATGAGGATTTTGTATAGTGGTGTGACAAAGATGAAAGATATTTCTGAGAAGATGGTGATGAGGGCTACAGGCTATGCATGTGATATGTTACAGTTTGGTCAGGAATTGAGTTCCTACAGTAATGACGCCACCAATGTGACAGCCTGGGCCACTGGTAGAAATGAAACGTGGCATCACCTCAAAAAAGGATTTAAGCATCTGTCTGTAGAATATGCTGCATTGGGAGACAAAGCGTCACAAGGGGCAGCCGACACAGATAGTGAAGTTGTAGAAAAATTATGTTTGTTTCAAGATTTACTTCAAGCTTATAAAGACTTAAATGAGAGACATGAGAAAGGAGTTTTAAATGATCACCAAAGAGCCATTGCTAAAATGGGGAGTTATAAAAAGAAAAGGATGACAGCTACTGTCAATTCAGGACCAGAGGCAGGCACAGTAGAACAGTTAGAACAGAAAATTTTAGAGCAAGAAAGTCAAATAGCCAATATGGAGAACAGGAACTACTTTAGTCTTCATTGTTTACAAATGGAAACACAATTAATTCATGCCAACTTAGAAATTCTGTATGATGTGTTAGGAGATATGGCAGCCATAGAGGCTAGATCACATTCTGATCTTGGTAAAGTGTGGAATGAAATAAAACCAATAGTAGACAATATACACGGGAGAGACAGTTCAAGGCCAAATTCACCGACGAGAACATCACCAGTCGGTTCACCAATGACAAGCAGTGGTGGAGGGATCCCCATGTGATAAATACTCCCGCATACATTCCAAGAGACTTGTCTTGGCAATATATGTCTAGTCATATTATATGAAGTGCTCCCCAGGTTCAACATCACATTTTTCTTGGTTTTGATTTTTGTTAAATGTTTGTATTGAAGAGATATAAGTGCAACATATCCTGTGGGCAATGTCTATTTGACAAATATTCAGATTTGCAAATTCATATAAAACTTGCATGTATTTTCCCATATATAAGTATTTATATACTTTTGGATGCAGGTGATATTTGCTAATTATGAGTCCAAATGAGGAACACAGTGAATCCTGTCTAAAAAAACAAAAACAAAAACAAAATGTTTCTGAATAAGCAGGTGTTTGGATTAATTAGACAGGTAATATTTTGAAATGCAAAATGTATTTCAGATATTTGAACAACATTAAAATTTCTGTTTACAGAGGATTTTGTTCAGGTTTTGGTTAAGCCATGTTTCCCGTACATCACATATCTAGAGTTGTTGCCTTTTGTTAAGTTAACACTGATTGGCCAATTTAAATGGTCTTCCCTCTGTTGCCATGTAAATGTGAATTGTAGTATTATAGTATGTATATGTAACTTCCTTTGAAGTATATGGAGAAAATTGGGGCTGGTGATTTGTTACTTGTCAGAGTTATGCCTTTTCAAAAAAATGTTTGAAAAGTGGCAAAATGTAGAGAGTGGCAAACTTGAGTAATTACACATATCTCTTCCGTAACCATAAAGAGTTGAGATTCTAAGAACTGATATGTACATGTATGTGAGTTCCAAGAAATAAGGAACACAGCTGCTACAAGTTGTGAACAAATTTGAAAATTGCATAAAATTATTTGCATTCAAATATTTTGTTATATGAAATTCTTTGTCAGTACATGTGTAGTTATAGATAAGATACATCATGTGTGAAAAGGCTGAACATAGTACTCCATACATTTGTCTGAAGAAAATCAATCAAACTTTGCTAAAATTTCCTCACAAACATTTTCCAATTACAGTGAAACCTGTGTAAACTGAACCTTCAGGGGATCAACTTTTGTGTTCGTAATAGACAGGTGTTGGTTTGTACAGGATAAATTAAGAAACATTTCTGTATTGGAACTTTATTGAAAGTTCAGTTTAGACAGGATTCTGATGTATTGAGGGTTCAGTTTAGACAGGATTCTGATGTATTGAGGGTTCAGTTTAGACAGGATTCTGATGTATTGAAAGTTCAGTTTAGACAGGATTCTGATGTATTGAGGATTCAGTTTATACAGGATTCTGATGTATTGAGGGTTCACTTTAAGCAGGATTCTGATGTATTGAGGGTTCAGTTTATACAGGATTCTGATGTA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00787	PX	PX domain	Domain	Interproscan
PF19566	Snx8_BAR_dom	Sorting nexin 8/Mvp1 BAR domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001683	Domain	Phox homology	Interproscan
IPR011992	Homologous_superfamily	EF-hand domain pair	Interproscan
IPR028662	Family	Sorting nexin-8/Mvp1	Interproscan
IPR035704	Domain	SNX8/Mvp1, PX domain	Interproscan
IPR036871	Homologous_superfamily	PX domain superfamily	Interproscan
IPR045734	Domain	Sorting nexin 8/Mvp1, BAR domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46571	SORTING NEXIN-8	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0006886	Biological Process	intracellular protein transport	Interproscan
GO:0031901	Cellular Component	early endosome membrane	Interproscan
GO:0034498	Biological Process	early endosome to Golgi transport	Interproscan
GO:0035091	Molecular Function	phosphatidylinositol binding	Interproscan
GO:0042147	Biological Process	retrograde transport, endosome to Golgi	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K17922	SNX8, MVP1; sorting nexin-8	-	Membrane trafficking	ko04131	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_54434-0.6 global RNA-seq network