Gene detail

Detailed information of Bpl_scaf_54203-0.30 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_54203-0.30	SYNDROMES PUTATIVE CHAPERONIN-RELATED	Bpl_scaf_54203	156300	167129	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Bpl_scaf_54203-0.30

GTGCGTTTATTATTAAGGGGCTGATTTTTTTTTCTGGAACGTTTAGGATCCACATGATCAAGGTTTTTTGGAACATCGTGCTGCTGCAGTTGATGAGCTCCTTCATCCATAGATTATACATCTGACAGTATAATAATATCTGACAGAAAAAGAAATGTTTAAAAGATTGGCCCAGTTTGTAAATTTGAAACCAGGAATTTCATTTTCTATTTTTGTTGGAGTTGGATTTCTTTTGTCATTACCCGGTTATATAAAGGATGAAATGTATGTAGAAATTGGTATACAACGAGCTGATAAACGTATCAAAGAGTTGAAAAGGATTGAAGAAAAGGGAAAAAACTCTTAAGAAAAATTGGTATGGATCAGGCATCACCCAGTTCACAAACAGAAATCAAGTTACAATACATCAACAGTCCAGATATTGTAAATGCATTACACTTATTCTTGAAAATTACCTCATCTTGTCGTAATGGATTCATTAAAATTATCCAGAATTCTGTAGGGGGATGTCATGTGATGACTTCTACTTCCTGTCGTCTATTACAGGCGTTGTCTGTGTCTAAACCTGTCATTTGTATTATTATTTCAGCAGTTCAAGGTCACCTTCAACATTTTTCAGATGGAGGCCATTTTGTTTCCATATTAATATTACAATTGTTAATAAATTCAGTAAAAGTTAACATTTCACCATCATATTTATCAGATTTATATGACAGGTTTTTAACATTAATTATTGAGGATATGACATCAGATGTATCTAGAATTAATTTAGACATATCTAGTCTTCAGCAAATGACAAGCTATATAAAAAGTATAATTGATACCAAACCACTGTGTAAACTTAATCAAAATGACTTGGATTATATATCTCAACTTTTAGTTAAACTATTTGTGAATTATCTCCCTTGTGAAGGCCATACTGGAAGTTGGGAACAGAACATACACTTCATATGTGATGATGGACATTCAGTTTCTTGTTCAAAACTGATTCATGGAATTTTGTTAATTGGCTATCAAATACCAAAAAAGATGAAAGAAAATTTTGCCAAAGTAGATAAAAAAATTGGTGTAGTCGTGGTTACAATATCTATGACTGGGGATACAGAAGAAATGATTGACACAGAATATGAAGTAAATGATGAAATTTCAGCAGACGACACCATGTTACGTAGAATTATAAGCTACTGTGACCGATGTATTGAGGAAGATGTTCAAGTTGTATTTTGTCAGAAAGTAATTCATCCCAGAGTGAAAAGTCATTTATATAAACACAATATTTTTGCTGTAGATCGTGTTGGTGCTCAGATGATTCCATACATAATCAAATTAACAGGTGCATGTTCTTCGAGGTGCTTCTCCTTTTCTGAGTCTGACAAGGGTTACTTGAATACTGTTGAGCAACAAATCATAAACAAAAAGAGTTATCTTTTCCTTAAGACAGAGTCATCACCAGTAGCAACACTTTTATTAACAAACGATCATGAAGAATCAGTCCAAGAATTGAAGGCTGTGTGTTCAAGTGCATTACATTCCATGGAAAGACTTGTTTACTCATCTTACGTACTGCCAGGAGGAGGATGCTGGGAAATGAAGACAAGCTATTGTCTTAGAAGCAAGGTTATGTCTGATATTGACAACCTAATTGATGAATACAGCTGCTCTAAATACAATATCATGTCAGCTTTAGACGTTTGTTGCAATAGTTTACAGAATATAGCCAAGTCACTTCTAAAAGATTCTGAAGAAGGAAAGACAGACCATATCTACCACCATTATTGGAGAGTTCCAAAGGAAGTTCATGAAGGGGAGACAACTTGTAGTTGTGGTATATTTTGTGCTGACAGTTCTACATTAGTTGACATACATAGTAAAGAATTTGTTCACTCAGTAACTTATAATATACAAGAAAATTATAATACATCTGTATTAGAGAGGACGATAGTTACAGATCAACTAGCCATGTGTTTGAATGCAGTGAAAACTTCCTTTCTCACTGCTAATTCTATTTTATCAACAAACTTATATATTTGTAATGGAAGATGATTTATGGAACATTTCAGCGAATGTTATATATTGTTGAATTGTGATGAAAATAAATACGAAATATTTGATTTTTACTGAAGTGTCAGATGTTGCATC

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00118	Cpn60_TCP1	TCP-1/cpn60 chaperonin family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002423	Family	Chaperonin Cpn60/GroEL/TCP-1 family	Interproscan
IPR027409	Homologous_superfamily	GroEL-like apical domain superfamily	Interproscan
IPR027413	Homologous_superfamily	GroEL-like equatorial domain superfamily	Interproscan
IPR028790	Family	Molecular chaperone MKKS	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46787	SYNDROMES PUTATIVE CHAPERONIN-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0006457	Biological Process	protein folding	Interproscan
GO:0032502	Biological Process	developmental process	Interproscan
GO:0046907	Biological Process	intracellular transport	Interproscan
GO:0051082	Molecular Function	unfolded protein binding	Interproscan
GO:0051131	Biological Process	chaperone-mediated protein complex assembly	Interproscan
GO:0060271	Biological Process	cilium assembly	Interproscan
GO:1902636	Cellular Component	kinociliary basal body	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K09492	MKKS; McKusick-Kaufman syndrome protein	-	Chaperones and folding catalysts	ko03110	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_54203-0.30 global RNA-seq network