Gene detail

Detailed information of Bpl_scaf_54193-0.16 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_54193-0.16	V-TYPE PROTON ATPASE SUBUNIT B	Bpl_scaf_54193	152570	168713	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Bpl_scaf_54193-0.16

ATGGGGGAAAGACAATCAAAAGCAATAAAACAAAGGTCATTTCTTGATCTAGATCACAAAGAAGACAATACCAGATATCTAGTGCTTGAAGATCTAGATCACAAAGAAGACAATACCAGATATCTAGTGCTTGAAGATCTAGATCACAAAGAAGACAATACCAGATATCTAGTGCTTGAAGATCTAGATCACAAAGAAGACAATACCAGATATCTAGTGTTACACATCAAGTATTTTGCCAAATTTGCAGAGATTGTAAATTTAACATTAGCTGATGGAACAGTTAGGAGTGGACAAGTCTTGGAAGTGTCTGGCTCAAAAGCTATTGTACAGGTATTTGAAGGAACCTCAGGAATTGATGCCAAACATACATTGTGTGAATTTACAGGAGACATTTTGAGAATGCCAGTATCTGAAGACATGTTGGGTCGTGTGTTCAACGGTTCTGGTAAACCTATTGACAGAGGTCCTCCTGTGTTAGCAGAAGACTTTTTGGATATTCAGGGTCAACCTATCAACCCATGGTCTCGTATTTATCCAGAAGAAATGATACAGACCGGAATATCTGCCATAGATAGTATGAACAGTATTGCTAGAGGACAGAAGATCCCCATCTTCTCCGCTGCTGGTTTACCGCATAATGAGATTGCTGCACAGATCTGTAGACAAGGAGGTCTTGTCAAAGTTCCAGGGAAGAGTGTATTAGATGATCATGATGATAACTTTGCTATTGTGTTTGCAGCTATGGGTGTAAATATGGAAACTGCTAGATTTTTCAAACAAGATTTCGAAGAAAATGGTTCTATGGAAAATGTCTGTCTCTTCTTGAATTTAGCCAACGATCCAACCATCGAACGTATCATTACTCCAAGAATAGCCCTCACAACAGCTGAATTCTTAGCATACCAGTGTGAAAAGCACGTCCTAGTCATCTTAACAGACATGAGCTCATATGCTGATGCTTTACGTGAGGTATCAGCTGCCAGAGAAGAGGTACCAGGTCGTCGTGGTTTCCCAGGTTACATGTACACAGATTTAGCTACAATATATGAACGTGCAGGTCGTGTTGAAGGGCGTAATGGATCCATCACACAGATTCCTATCTTGACTATGCCTAACGATGATATTACCCATCCTATCCCTGATTTAACTGGTTATATCACAGAAGGACAGATCTATGTAGACAGACAATTGCATAACAGACAGATTTATCCACCAATCAACGTATTGCCATCATTGTCCAGATTGATGAAGTCTGCTATTGGTGAAGGAATGACAAGGGAAGACCACTCTGATGTATCAAATCAGTTGTATGCTTGTTATGCCATTGGTAAAGATGTACAGGCCATGAAAGCTGTGGTGGGAGAGGAAGCTTTAACACCAGAAGATTTGTTGTACCTAGAGTTTCTGACAAAGTTTGAGAAGAATTTTATAGCACAGGGTCATTATGAAAACAGAACAATATTTGAATCTCTAGATATTGGATGGCAATTGTTACGAATTTTCCCCAAAGAAATGTTAAAACGTATTCAACATTCAATGTTAGCAAAATATTATCCAAGAGACGCACAGAAATCAGCAGCTACGGCAGCCCATCCCGGCCAAAGTACACAGTTATAGAATTTAACATTGTTAGTTAGTTGTATTATACATTCCCCGAAGATTAGGCCAAAGGCCTTAGTGCCATCTGTTTCTGTTTCTGTATTATAGGAAAAACAGAGAAGAGATTGTCGAGCTTCTGTTTAAATTTATTGTAATACAGATCTAAGTCAATATAATTTATTTCGTTAAAGGGATTGGAACAAATTCATCAATAACATTTGGTTTGAAAATGTCTTGGGATTTGTTATTTCTTCTTTGAATCTGTTTAAAGTATTGTATATTATAAACACTTTCTTTTTCAAAAGTGTGATTTTTTTTCAGGGTTTTTTTTTTTTGTTGCATTTAGTTAAAAAATTTTATCCATAAAAAGAAATGGTTTTCTTTCATAGTGGAAATTGTAATCAGGTTTACACATTGATAATCATTTCATGTTTTAGGGTAACTTATACCTTGCAAAAAAATCAAATGCTACATTTATTCATGTAGGCAAAACGAACACATATTTTGATCAAAAGATTGAAGGTTATTTGACTAGGGGACAACATTTTTAATTTCTTGTCTGCATAGGTAGTTTTAATAATGTATGTAATTATAACCTAATTTGTATATACAAAATCTAGTCGCAGTTCTACTTTGCATTATGGGTCGTCAGGACTTGCGCTCGTAAAATTTACAAGCACATGTTTTGCCCCTGTACTCGAAATACAGCTAATCAGAACATTATTCAATAAATGCAGTATTCTGATTGGACGATTTTGGAGTATGAGTGTGAAAATTGGGCTCCAAAAATATTTATGACTGCAAGACCTGTACAACAAAATAATGTCATTGGTCAAAACTTCTGTAAACAATTAAGAAATGACCAATGTGGTGATGGCAATTTGGTGTTCAGAAAAAAATACCCATGATTCAATAGTTTCTGATATTACAGGCAATATATATGTAGTCATATGTGATACTGAATCACTTGGGAGGAAATATTAACCAATGAAACCTGTATGAACCTCTTCTGTTGTAAAATCTATTATTTTGTTAGTACAACTAAGCATATCTTGAGAAACCACTGTCTTCTTGCCAGCAAAATGTGGTGGTTCATGAAAAGGTTTCATTTACCTAGAAAATATATCATGGAAAAAGGTAGACCTCTATTAGAGAGATCTTATAAAACGTATGTAACTTTTTAGAAGTCATGAGTGGAGATTCGTAGACAACTATCAAAGGAATGGGACAACCTATATTTTAAAGATTTACTGATGTTACTATGAAAAGATTAATACGTATATCTGTATGAAAATTGTTTGTATTGATGTCTAAATCTAAAATTACTGTCTCCCTTGAATATTTTGTGATAATTGAAAAATTTTAATTGACATATGCAAATTAGATGAGATAATCATAATGACCAAGATATACATATCTTTTTTTCCCAAAACATCAAAAATTATGCAATTGTCATCTAAAAATTCAGAACAAATGTGTGGCAGTTGCACACTCTACTTTCAATGCAAATGTAAGAATTCTGGGTTTTTTTTCTGGTCTGGTGAATATGAATTTGTACAAAACTTATATTTGTGCATTGTTAAGTATGCTTTGTTATGTTTTTTTTTGGTTTTTTTTATACTAGGACATGAATCATTTAGAGTACCATGACCTTATGTAGAATTTCAGATTTTTAAAAGAGATGACACATTACAATCAGAGTTCACCCTATATTGGTGTCCTAAATGTTGAACTATTATATATAAAGTATAGCTAGACTGTGTATTTGGATGTGTAGATAGTGTGTACACATGGATGTCTGTGATCAAAAACATTTATTTCATAAAAAGAATGTAATTTTTTTTGTGTTTTTTGTGCAACTGAATATGTATTATTATGCTACTACCACTTCATAAATAACCCTATTTTATGACCTATAGGTCAAGCTTCTTTTCTTTTCAAAAAGCTCCTTAAACAATCGCAAGTCTATGTAGAAAAGGTCAAATAGACCTATAGTCAACAAAACTGAGTATAAATGCTGTGCATTTTATTTTATTGAAGTTTGCCAATGAATTTGAAATAAAAAAGATCACATGAATATCATTGTAATCAAATTCTTATCCTTTGCCGGTGATAATACATGTTTATCGTAGTTTGAAACATGCATGATTTCATGACCGAGAGAAAAACTAATTTCATATGAAAATCATATACCGTACTACTAACAATAATATTTCTTCACATGCATTGTGAATGTTTTGATATTGACATAATCATGTGAGTTTTTGTTGAAATGATATGCGCATGAAGATCGTGTGTTCATTTTATTCTGTAAATAATGAGGTGTATCCATGCAATATTGTATACATATACAGTGGAATCTGTCTTGGGAAACCATTCCCTTTGCCAATAAAATGTGGTTTCTCAAAAGATGTGCAATATTATATAGTGGAATCTGTCTTGAGAGTCCACCCCTTATGGCAACAAAATTTGATGTAAAAAATCCTACAAAGTTTTATGTATATACTTGAGAGTTGCCTCACAAAGAGATCAGTCGAAGCCATACATTAAAAAAAATGGTTTGTTGTTTCCCAATCGTATCTACCTAAAACAGTAATGTTGAGGGGGAAAAAATAAAAAAAATAATTTAAAGCGGGGGGAGGGGTTTAAGAAAAAGATCGATAGGTGATATTTTTATGGGTGGTCCTATCAAGACAGGATCCACTGTATTTGTTTTCTAGACAGATATTTCTGTTATATTTCAGTTGTAAAAGAAACACAGAAAGGTTTCTATTTTATATCAACATCTAAAACATGTAATAAAACTTAAAAGTACATGACATTGGCTGTTGTCTTTACTTTTACAGTATGCCCATTTACATTTTGAGACTTCCATCTTTCTGTATTGCTCGTTAGATTTGCATAGACCAATTATAAACACGGGGTCATCTTACCCATGATTGTATGGTTTTCAGAATTACGTGTTCTTATGGATCTGGGCATACCACTGCTGAATTTGTGACTGTATACTGTATGAGGCTAGGTGTACTCAAGACAACTTTATTTAATATTGTCAGTGGCTTTCTCCGTGTACTTTGGCTTGCCCCACCAATAAAACTGATTATTACTGTATAACTCAAGATATTGTAGAATGAAACATCTTACAAGCCTTTTCAAATGGGTTTGTACCATGTAATCTTACCCATCAA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00006	ATP-synt_ab	ATP synthase alpha/beta family, nucleotide-binding domain	Domain	Interproscan
PF02874	ATP-synt_ab_N	ATP synthase alpha/beta family, beta-barrel domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000194	Domain	ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain	Interproscan
IPR004100	Domain	ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain	Interproscan
IPR005723	Family	ATPase, V1 complex, subunit B	Interproscan
IPR020003	Active_site	ATPase, alpha/beta subunit, nucleotide-binding domain, active site	Interproscan
IPR022879	Family	V-type ATP synthase regulatory subunit B/beta	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43389	V-TYPE PROTON ATPASE SUBUNIT B	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0007035	Biological Process	vacuolar acidification	Interproscan
GO:0033180	Cellular Component	proton-transporting V-type ATPase, V1 domain	Interproscan
GO:0046034	Biological Process	ATP metabolic process	Interproscan
GO:0046961	Molecular Function	proton-transporting ATPase activity, rotational mechanism	Interproscan
GO:1902600	Biological Process	proton transmembrane transport	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K02147	ATPeV1B, ATP6B; V-type H+-transporting ATPase subunit B	-	Oxidative phosphorylation	ko00190	PMID: 28812709
			mTOR signaling pathway	ko04150	PMID: 28812709
			Phagosome	ko04145	PMID: 28812709
			Collecting duct acid secretion	ko04966	PMID: 28812709
			Synaptic vesicle cycle	ko04721	PMID: 28812709
			Rheumatoid arthritis	ko05323	PMID: 28812709
			Vibrio cholerae infection	ko05110	PMID: 28812709
			Epithelial cell signaling in Helicobacter pylori infection	ko05120	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_54193-0.16 global RNA-seq network