Gene detail

Detailed information of Bpl_scaf_54175-2.11 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_54175-2.11	HMG DOMAIN-CONTAINING PROTEIN 4	Bpl_scaf_54175	192062	208951	+

Gene Structure

More details in Jbrowse Sequence

CDS

Bpl_scaf_54175-2.11

ATGTCAGGAAAGCGTAAGCGTGATGAGGATGATTTTGAATTCACACCACCGTCTGCTAAGCTTTCTAAAGCACAAAGAGATGAAGTTACACGATCAGGAAGATCCAGAAAGAAACCAGCAAGATTTTTGGATGAATCCATAGAAGAAGACATTGATAAACTAGAAACTGAATCAGTTGACAATGAAGAGGAAACACCAACATCTCCTATACAAGCCATTAAGACAACTCCTGTAAAGTCTCCTCATCTACAACAAAAACTATTATTACAGACTTTACAAACTGAACAAAAACCTGTAAAAATTCTCACACAACAGAAAGTACAGCCCATACAAATACAGATTCCAGGCTCATCTCTTTTAAAGACAGTTTCTGTTCCACAGGGAATCCGAGTTGTCTCTCCTACATCTCAACAGCTTCAGGTTGTCTCCCCTACATCTCAACAGCTCCAAATTGTCTCCCCTACATCTCCACAACTTCAGATGGTGTCTCCTACATCTCCACAGCTCCAGGCTGTGTCCCCTACAGCACCACAATTTAAAGTTCTATCTCAGATGGTTCCACAAGTTAAACAGCAAGTTGTGCAACAAATTGTACCTCAAAATGTTGTTACGACGCCAACAACACCACCTGATAGTCAAGCTGGGACTAGAGGAAGGGTACGAAAAAAGTCTGCAAAAGTCTTAGAAATGGAAGAATTTGAAGAAGCAGAGAAAACTAAACCAAAGAAAATGACAGGAAAACAACAAAGCCCTATTACCTCACCTCTTCCTCCTACAGGAGTTACCATTGTTAGAAATGAACAAGGTCAAAATGTAGTGGTATCGGTAGCAGGGGGAATTCCCGAGCCAACAAAGAAATCAAAAACTAAAGAGAAGTTGAAATTTCCATTGGTTAATGAAATGCAAGTTACCGAAAACTTAATAGTTAAGGAGGAACCTAGTGACTTGTCATCAGCTGCCACTCTGTCAGAAAATGTAACTGGACAATCACCAAGCTCTACAAAGAAGCAAAAACAGATTAAATCTGAGCCGGTAACATCTAAAAAACAACAGATGGGCGTGGTAAGCCAAGAGCCTGCTACCACTCCTACCAAGAAGGGGAAAAGTGTTATTAAAATGTTACTAAATACACCAACACAGTTTACTGCACCCACTGTTTCAACCACAGCGATAAGTTCAGATAAACCTAAAGAACTGGATAAAACCATTGATGTACCTGTAGATGTTGTCAAGACTGAACCAACTGTAGTGAATGTGTCCACAGAGAAAACTGTTAAAAAGATTATTTTGTCTCCTAGTGATTTGGATGATGGTCATCTATCCTTTGATGAGGATGAAGATGATGATGAATTTGATGATGAATTAGATGATGAAGATGAGGGAGACGATGAGGATGAAATGGATTGGCAGTTTGAATCTCAAGATGGCACATTGTTAGCTCAAGAAGAACTTGCGAGGAAAGTAAAAGAGATATCTCCTAGTGATCTAAAAAAATCAAAGAAAAAGGCTAGCAAAAAGAAGACAGCACATGATGATGATGAATTTGATGATGATGATTTTGGTGATGATGATGACGATGATGTTGAAGGGAACTTAGTTATTGCTGATGAATTTAACAAGAAAAAGAAAACAACGAAAAAGGCACCTTCAAAAAAGAAAGCTGACACAACAAAAGGTGGGACTGGCAAAGCAGAGAAACCTACAAAAGAAAAGAAGAAAAAGAGATTGACTGCCTACACAATGTGGTGTAATTCTATGAGAAACAAAGTGTTACATGAATCACCAGGAATAGATTTTGCCCAGTTAAGTAGAAGATTAGGAGAAATTTGGCAAGGATTACCATCACGAGATAAAATGTCATGGAAAAGGAAAGCGAAGAGAGAAGCCAGAAAGCTGTTAGGTAAAGGTTTACTGATCCGTACAGGTAAATCTGTAGCTACAACGCCATCTACATCAACTGTGGTTCAGCAGAAGACATCTCAAGGTCCAAAATCTGTCCCGCCAATCCATCATACACCAATCACACATCACAGAGCAGCAGTGACTGTACAGAAAATGGAGGAGCATGCTGTAATACTTAGGGGTTCAGGAATAGAACCAATAGATGTTGCTGCTTACCTTAAACTTGTTGGAGAATCTCTTAGTATCATTGGTATGAGGTTACAGGAACACAGGGGTCTTATTGCTGTACAGGGAAGCTTGTCTGTACTATTAGATTCACTTTTATGTGCATTAGGGCCACTTATGTGCTTAACAACACAGATTCCTGAACTTCATGGCTGCCCAGCTGAAACACATAACAGAACATTGGACAATCTGGCATACTTTATGCCAGGTCTATAA

Transcript

Bpl_scaf_54175-2.11

ATTCACTTCTGTTAAACCGGAAGTTTGTTTGTTTATATTCTTAGCCTGGAACGAAATTTAAAATTTATTTGCTTTGTTCCCCCTCTGTCATGTCAGGAAAGCGTAAGCGTGATGAGGATGATTTTGAATTCACACCACCGTCTGCTAAGCTTTCTAAAGCACAAAGAGATGAAGTTACACGATCAGGAAGATCCAGAAAGAAACCAGCAAGATTTTTGGATGAATCCATAGAAGAAGACATTGATAAACTAGAAACTGAATCAGTTGACAATGAAGAGGAAACACCAACATCTCCTATACAAGCCATTAAGACAACTCCTGTAAAGTCTCCTCATCTACAACAAAAACTATTATTACAGACTTTACAAACTGAACAAAAACCTGTAAAAATTCTCACACAACAGAAAGTACAGCCCATACAAATACAGATTCCAGGCTCATCTCTTTTAAAGACAGTTTCTGTTCCACAGGGAATCCGAGTTGTCTCTCCTACATCTCAACAGCTTCAGGTTGTCTCCCCTACATCTCAACAGCTCCAAATTGTCTCCCCTACATCTCCACAACTTCAGATGGTGTCTCCTACATCTCCACAGCTCCAGGCTGTGTCCCCTACAGCACCACAATTTAAAGTTCTATCTCAGATGGTTCCACAAGTTAAACAGCAAGTTGTGCAACAAATTGTACCTCAAAATGTTGTTACGACGCCAACAACACCACCTGATAGTCAAGCTGGGACTAGAGGAAGGGTACGAAAAAAGTCTGCAAAAGTCTTAGAAATGGAAGAATTTGAAGAAGCAGAGAAAACTAAACCAAAGAAAATGACAGGAAAACAACAAAGCCCTATTACCTCACCTCTTCCTCCTACAGGAGTTACCATTGTTAGAAATGAACAAGGTCAAAATGTAGTGGTATCGGTAGCAGGGGGAATTCCCGAGCCAACAAAGAAATCAAAAACTAAAGAGAAGTTGAAATTTCCATTGGTTAATGAAATGCAAGTTACCGAAAACTTAATAGTTAAGGAGGAACCTAGTGACTTGTCATCAGCTGCCACTCTGTCAGAAAATGTAACTGGACAATCACCAAGCTCTACAAAGAAGCAAAAACAGATTAAATCTGAGCCGGTAACATCTAAAAAACAACAGATGGGCGTGGTAAGCCAAGAGCCTGCTACCACTCCTACCAAGAAGGGGAAAAGTGTTATTAAAATGTTACTAAATACACCAACACAGTTTACTGCACCCACTGTTTCAACCACAGCGATAAGTTCAGATAAACCTAAAGAACTGGATAAAACCATTGATGTACCTGTAGATGTTGTCAAGACTGAACCAACTGTAGTGAATGTGTCCACAGAGAAAACTGTTAAAAAGATTATTTTGTCTCCTAGTGATTTGGATGATGGTCATCTATCCTTTGATGAGGATGAAGATGATGATGAATTTGATGATGAATTAGATGATGAAGATGAGGGAGACGATGAGGATGAAATGGATTGGCAGTTTGAATCTCAAGATGGCACATTGTTAGCTCAAGAAGAACTTGCGAGGAAAGTAAAAGAGATATCTCCTAGTGATCTAAAAAAATCAAAGAAAAAGGCTAGCAAAAAGAAGACAGCACATGATGATGATGAATTTGATGATGATGATTTTGGTGATGATGATGACGATGATGTTGAAGGGAACTTAGTTATTGCTGATGAATTTAACAAGAAAAAGAAAACAACGAAAAAGGCACCTTCAAAAAAGAAAGCTGACACAACAAAAGGTGGGACTGGCAAAGCAGAGAAACCTACAAAAGAAAAGAAGAAAAAGAGATTGACTGCCTACACAATGTGGTGTAATTCTATGAGAAACAAAGTGTTACATGAATCACCAGGAATAGATTTTGCCCAGTTAAGTAGAAGATTAGGAGAAATTTGGCAAGGATTACCATCACGAGATAAAATGTCATGGAAAAGGAAAGCGAAGAGAGAAGCCAGAAAGCTGTTAGGTAAAGGTTTACTGATCCGTACAGGTAAATCTGTAGCTACAACGCCATCTACATCAACTGTGGTTCAGCAGAAGACATCTCAAGGTCCAAAATCTGTCCCGCCAATCCATCATACACCAATCACACATCACAGAGCAGCAGTGACTGTACAGAAAATGGAGGAGCATGCTGTAATACTTAGGGGTTCAGGAATAGAACCAATAGATGTTGCTGCTTACCTTAAACTTGTTGGAGAATCTCTTAGTATCATTGGTATGAGGTTACAGGAACACAGGGGTCTTATTGCTGTACAGGGAAGCTTGTCTGTACTATTAGATTCACTTTTATGTGCATTAGGGCCACTTATGTGCTTAACAACACAGATTCCTGAACTTCATGGCTGCCCAGCTGAAACACATAACAGAACATTGGACAATCTGGCATACTTTATGCCAGGTCTATAAATATATGTTTTAGCTCCTGTTTTAATGTCAATAAATGTAAAAAGAAAAAACTAAGTGGTACAAATTATTTGCCTGGC

Protein

Gene family

Gene family	Subfamily
Transcription Factors Family	HMG

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00505	HMG_box	HMG (high mobility group) box	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR009071	Domain	High mobility group box domain	Interproscan
IPR036910	Homologous_superfamily	High mobility group box domain superfamily	Interproscan
IPR042477	Family	HMG domain-containing protein 4	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46584	HMG DOMAIN-CONTAINING PROTEIN 4	Interproscan

Gene Ontology

GO terms	Category	Description	Source
-	-	-	-

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K11298	HMGXB4, HMG2L1; HMG domain-containing protein 4	-	Chromosome and associated proteins	ko03036	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_54175-2.11 global RNA-seq network