Gene detail

Detailed information of Bpl_scaf_54145-0.11 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_54145-0.11	DNA-BINDING PROTEIN SATB FAMILY MEMBER	Bpl_scaf_54145	111115	117148	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Bpl_scaf_54145-0.11

GGTGCCAAGTCACTACCAATTCACTGTGTGGTAGAACAGACTAATGGACCAGTAACATTTGAGGACGAAGGCAGTTCACACTTTACAGTAGAGTTAGATAGTTATGCTATCTTACCCTGCACAACTCTCTTCTCAGAATTGGTTAGAGCAGCACTTGTTAAATTAGGCTACAATTCTACAGAATCTCTGAATGCAAAAGGTGCAATACAAATCAAAAATTGGCGACCACTGAGTTTTGAAACTATTAGCAACAACCCAAAGTCAACAGTTGAAGATATTCTAGGGGAGTTAACCCAAGTTGCCAAACTCAGAATCCGACTTTGCAGCAAGACCAAGTTAAGTTCTGCAGATGAGGTCAAAGGGAGGTTACTCCAATTGTTGCTAAATCAATCACAAGGGCTGTTAATGAATACTGGCTGTCCTATCGAAAAGACTCTTATCACATCATTTGCCAAAGGTGATGCTTATGCTAATTTATCACCAGAATTACGACGAGCTTTTGACAAATGGTATGCAGAACAAATTCGTAGTGTTAAGCCAGATGAAGTCAGAAATATTCATGAAACATCTCCAGAGAAACAAGCAGAAACAATGCAACAAAGCGAACCTACATCTGTTTCATCAAGTATTCAGTCAGTAGTAACATCATCACCTCAGTATCATTGTAAGACCAGAATGAGAACTTCGTTTGACCCAGAGCATGAGATTCCACGTCTTCAAAAATGGTTTCAGGACAATCAGCACCCGACGCGTGAACAGATGATACATTATTTAGAGGAACTAAATTCTCTTGATGCTAGAAAAGGAAGACGTCCACTAGACTTGACCAATATAATATATTGGTTCAAAAATGCAAGAGCAGCACACAGACGAGCTTCTCGTCAATACGACGGAGATGGTTCCTTTGATTTGGAGGAGGGACAGCGTGAGAGCAGCCCTAACGGTGATCACAGTTTACCTTACCTGCCAAACAAAAATGCAGTGTACATGCTGCCATACCCTATCCATGGCCATTACCCTACTCCAGAAGAATCAAGACTGTTCACTGAAAACTCCAGAGGACAGAATCAGAACATATCTAATGAAGACTCTAGAGAGCCATTTGATTTGTCACAGTCTCGTAATTCTAGTCAGGATAAATCTCCTGTGGAAATTAAAACAGAAATTCCCTCACCAGTAAACAGGGAACCAGAAAACACACATCTCAAGCAGGAAGCAGACGACAGTGAAAATAATAACAAGAGCAGTCCTGCAGTAAATGGTTGTAAATCAGAGGATTCTAGCCCATCACAACACAATATAAACCATAGCAACGGTAGATCAGTCTCAGATTCAGAGGGAGAGGATTCAGAATTTGAAGACGATCAATCCAACATTGGATCAGAATCTAGTCACGAAGCAGCAAATCTGTCAATCAAAAATAATATGGAAAATCAGGGTTACCTTAGCAATGGATTGGGGCATTTGCAAAAAACGTCAACAGGGCTTCATCAACCATTACACATTCCCCATTTTCCACACCCATTAGCTATGCATTATTTCCCGATGAATACTCATTTTATGGCTCAACAAGCTGCTCGATACAATCAACAACAACAACAACAGACATCACCAATGTCGAGGTCAAACTCATCTAGCAATACTCATCGCAAGAGACGAACCCGCGTATTCATTGATCCAATGTCAGAAATTCCCATATTGGAGAAATGGTTTGCAGAAGATACACATCCGTCGTCCTACATGATAGACAAATTTTGTGAGGAACTGAATCGCTCTGAATACAGGCAAAAATTTCCTAAGTTGGAACCTAAGAATATTCAGCTTTGGTTCAAGAATCATCGTGCTAAAGTGAAACGAATGCGTCTGTCGCAGGATTATGATCAGCCAGGGTTAGACTCGGATGATCAGAGTGATATCATTAAAAGAGAGATTCATTGATAATGACCATTATTTTTGTTAGCCATTATTTTGTTATTTCTTTATCATGGTTCTTTTGTTGGATTTATAGTGCATTTTATAATAGGTGCTAAATGTTTACCTAATTTTTTTTTTATTAAAAATGTTCAGGGAGTAACTATATGAATAACATATGTGTGGGTAAATTTAAGGTGTGGTCACATGAGACAATTTTTAGTTTGATCTTCAATCCAGTTTTATTTTTGACATGCTTTTGAGAAAAATCCTATTTTGTGAACACAAAAGTCTAATGTCGACAGTTGAATCGTAATGTCGTTTAAATTTCATGTGAATCGTATTGTGTGAAGGGTGAAGGAAATTAAAAATCGTATCAAAATCGAATGGAAAGTCAGACTGATGTGAACAATTGGCCATTAAATTTACATGTGTCGCAAATTCAAAATCGTTCCGAAATCGGACTATAGATCACCTCATGTGACTGCATCTTAAAATACAATCTTCATAAGACATTGGCGT

Protein

Gene family

Gene family	Subfamily
Transcription Factors Family	Homeobox

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00046	Homeodomain	Homeodomain	Domain	Interproscan
PF16534	ULD	Ubiquitin-like oligomerisation domain of SATB	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001356	Domain	Homeobox domain	Interproscan
IPR009057	Homologous_superfamily	Homeobox-like domain superfamily	Interproscan
IPR032392	Domain	SATB, ubiquitin-like oligomerisation domain	Interproscan
IPR038216	Homologous_superfamily	SATB, CUTL domain superfamily	Interproscan
IPR038224	Homologous_superfamily	SATB, ULD domain superfamily	Interproscan
IPR039673	Family	DNA-binding protein SATB1/SATB2	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15116	DNA-BINDING PROTEIN SATB FAMILY MEMBER	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000978	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0006338	Biological Process	chromatin remodeling	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K19774	DVE1; homeobox domain-containing protein	-	Longevity regulating pathway - worm	ko04212	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_54145-0.11 global RNA-seq network