Gene detail

Detailed information of Bpl_scaf_53846-2.4 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_53846-2.4	DYNACTIN 1-RELATED MICROTUBULE-BINDING	Bpl_scaf_53846	230026	247252	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Bpl_scaf_53846-2.4

GTTGAAAGCACATGTTTGTGTTGTGATCTTTCTGGAAGCATTCACCATTTTTAACTCTGAATATTAGTACAAAGGTCTCGTGTAATAATGTCACAATTTTCAGTAATCACACAGAGTGCTGTAACAATAAATGTTACAAGCTCAGCAAACTCATTTGGTACAGAAAGAAACTTTCAAAAAGACTTGTCCATTGCAGATTTTAAGAACAAATTAGAATTATTAACAGGTTCTCAAGCTTGTAATATGAGATTAGAGCTGTACAGTAAAGAGAACAAACTTCTTGGTAAGGTAGAAGACGATGATGCATTGTTAGGCTCCTTCCCAGTAGATAATGGATGTAGACTCCATGTAGTAGACCCAACAATTAAACTAGGTGAATTTGAAGATGTATCTAAAGTAGAAAAATTTGAAATGAAAGATGACGATTATGCAAAAAGAACCGATTCAGTTAGAGCTTTTAAAGAAAGGAACAAAGTGGGAAGATTCGCTGAACAAGATCCAGAAGAAAAGAAAAGGAAAGAAGAAGAGAAAAAACAAAAAGAAGAAGCTCAAAAGGCTAAAGCAGCGACCATGAAAGTTGGTGACAGATGTGAAGTAAGGCTTACAGGGCAACCTAGCAGAAGGGGAGTCGTAAAATATGTAGGAGAGACAGAATTCCAGGCAGGTTATTGGATAGGTGTACAGTATGATGAACCTTATGGCAAAAATGATGGAAGTGTTAAAGGTAAAAGATATTTTGAATGTGCAGATAAGTATGGAGGGTTTGCTCGACCAGAAAATGTGGAAGTAGGTGATTTCCCAGAAGAAGATTTAGGCTTTAGTGATGAAGATGAAATATAAAAATGTGTTCACTGTTATTATTGTATAATTATTGATCAAATCAAGTTACAATCATTTTACATTGATTCCAGTTGAATAGTACCAATATTATTTTTTAGCCTACTGGGAAAAGGACATTTGAGCTTTTACTATCATTTGGTGTCCATCATATGTCTGTCATCCATCTGTTATTTAACCTTCTCCTGAAGAACTGCTCAACCAAGTGAAACAAGACTTGGAATTGGGATATTGTCTTTTAAAAATGGTGATGATTGTCTATGGGGGCCTAAAAATGGGAAATCAGAAATATTCTTTTCAGGAACCAAGATTTAAAGCATACAATGATATTTTCTCTAATCCATCTCTGTGATTTGCAAATGAAGGGCTAGGATCTACAAGATAAGAATCCTGCAGGTTCAAAGTTTAACATTTGCTGCAATGGAGACAATTTAAAAAATATTACGTTATTCTTAAGAACTAGGAATAAAAGTATAACATAGATGATGGTTAATATTTTTTCCTAACAAGGTGAGCTATGCAGCCTTAGGAAAGCTTTTACTTTCTTTCCTTTTAAAAGTAGATCAAATATAGATGAATTTGTTGTAAGTTTTCATGCAAATAATGTCATTTATGCAAAACTGTTGGTCCTTTTCATGTAAAGGGGTTCCAATATGTGGGAAAAAAATGCATAATTTTGCTTGTTAGTAAATTACACAAATCGTTAATTCAGAAGAAGAAAAAAATGTGTACACTTTAAAACTTTAGGAAATACTTACACATATATCAAATTGCATTATAACCCTAAAATTAGATACTTGTGACTAGTAGAATATTAGTTATCAGGATGTTTGATCTGAACTTACATATCAAGAAATTTAGGTAAGTTTATAACATTATTTTTGCATTGTTGCCATACACGAAAATTAGGCCATTATGACATAACCATGATCTAATTTTACACTTATGTTTAATGTAAAAAAAACATGATGTAATATGCCATATGTTGTAGCATGCTTAAAGTAGGTCACCATTACCTGCTTCTTACCTAATTTTCTCCTGAAAAGCTGTTGAAACATGTTGCTAGTTATATATCAAGAATTAATTTTGCCCCAAAAAATGAATTATGTCATGATCTTTCTAAATAGGATTATTATACTATTATATTTAAACATTTAAAAATAAATCTTGTGATGTAACCACATTTTTCAACTTATCAATGTAATTTTTAACGTTTATTATGGTCGTGCATTATAATTTTATTATAATTATATTCACATTGTTTTCAGGTTTGTATGTAAAATAATATGAGGGGTTCAGATGCAGCTAATACCCATCCATCAATAATTTAGTTAAACTTTATTCAAGTGAAGTTGATTTTTTTTCTAGTTCTTTAGTTCACCTGGCTCAAAAGACCAAGAGAGGTATTTCATCACTTTGGTTCTGTCGTTTCCTGATAATCTTACTCATTTTGGTTTTTTTTTTCTGGAAGCTATATGGTTGAATGAGCACAAACTTGGCAGAAATACTATTTAGATGGTTGTCAACGTCGTAATACATGTAATGGAAATATAATCTACAGGGTTTATGTTTTATTTGTTGATTAAAAATCCAAGATGGCCATCATCACAGGACAAAGTACTTAGCTACAATATCCTTAATGCTGAACATAACTTGTACTTAGAAGTGTGTGAGGGATGAATCTTAGCTTACAGATACAAATTACTCTTGAGTTGTCTATATATAGAATTTCACTTTGTTCTAAGTTTTCTTGACATTTTATTGTGCTGACATTATCTTAGAATTGTTAAAATTTAATTTAAGACAATTTTCTAAGTTGATGGAATGAATATAGTTGAGGGAGTTCAAATCAAATTTAATTTGTATTAGCTTCATATTTTGGAAAATATTTTGATGTGTAATTACTGTTTTATAGATTTTATTAAGTTTTATGCTTGGCAAATAAATCAGAATTCTTCCCCATCATCAACAAGCCACTTAATGGGGTTTTATTAAAGTTCTTGTTATCTTTAACTCTCTGTTAACACTTTAAAATTGCTGTTCAAACTTGATTAAAAGTCAGAATTCTTTTATATCACAACTTCAGTAAAGGTTAAAACTCTGACATTTATGGACAAAATGAAATATTGCTTAAAATATTTCTCTAATATGGGCAGTAATACATGAATGATTCTGTTATGGAAACACTAAAGATAAAAATAGATTAGTAAATAACCTTTATGCTTAAAATGTGACATTGTCAAAACTTTCTAAGTTGGAAAACATGTGTCTGATCTGTTTTTCAATTGATAGTCAATAAAATATGTGAAAACTACCATAATCTTTGTAAAACACAGCTATGTTATATGTAAATCAGTATATATTCTTAGCATTTCAGTAACATGATATAAGGTAAAAGTAAAGATATATTCATATATAACAAAAAACATGCAAAGATATTTTGGCTGAAATAAACAATTCGAGGTTAATAATATATGTGATGTTTTCTGTATCTTGTTGATTTCTGATTTACTCTTGAGTAAACTACTGTAGAATCATCCATACATTGTACCATGTTAGTAATCAGATTATTGTATTAACAAAGTTTGTCAGTCACTTGCAGCAGATCGGTGGTTTTCTCCAGGTACTCCAGTTTCCTCTACCAATAAAACTGACCGCAATGATATAACTGAATTATTGTTGAAAGTGATGTTAAACACCATAACCCATCCACCCACCCCTGCATTAACAAACATTTAGTAGTAGTAACTTGAAACTCCAGATTTCTTCATTCAATTGAATCCTCTCTTTTTCTTTGAGTACAAAATCTCATAATATTTTTCACATGCATTACAGGTGTATTCTTTATGTTACTATGCATTATTTATTCTTGATTTTATGTAATAATTTAATGTTATATATTATGACTAGGTATTCAGTAACACTGTCATTATGCAAAGCTTACTGCCTGCCTTGTTTGTCATTTCTTATACAAAATATTGTATTCAATAAAAACCATAT

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01302	CAP_GLY	CAP-Gly domain	Domain	Interproscan
PF14560	Ubiquitin_2	Ubiquitin-like domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000626	Domain	Ubiquitin-like domain	Interproscan
IPR000938	Domain	CAP Gly-rich domain	Interproscan
IPR029071	Homologous_superfamily	Ubiquitin-like domain superfamily	Interproscan
IPR036859	Homologous_superfamily	CAP Gly-rich domain superfamily	Interproscan
IPR045172	Domain	Tubulin-folding cofactor B, ubiquitin-like domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR18916	DYNACTIN 1-RELATED MICROTUBULE-BINDING	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0007021	Biological Process	tubulin complex assembly	Interproscan
GO:0007023	Biological Process	post-chaperonin tubulin folding pathway	Interproscan
GO:0031122	Biological Process	cytoplasmic microtubule organization	Interproscan
GO:0035371	Cellular Component	microtubule plus-end	Interproscan
GO:0043014	Molecular Function	alpha-tubulin binding	Interproscan
GO:0051010	Molecular Function	microtubule plus-end binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K17262	TBCB, CKAP1, ALF1; tubulin-specific chaperone B	-	Cytoskeleton proteins	ko04812	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_53846-2.4 global RNA-seq network