Gene detail

Detailed information of Bpl_scaf_53430-0.7 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_53430-0.7	ADENINE DNA GLYCOSYLASE	Bpl_scaf_53430	8709	62566	+

Gene Structure

More details in Jbrowse Sequence

CDS

Bpl_scaf_53430-0.7

ATGGAAGCTACTATAGGGTTTGAAACTATATTTTCATTAGCTGATGAGAAGAAATTGGTTGAGCATGTTACTTACATGGCCAACATTGGTTATGGCTATAATAAAATAGGCATCCAGTATTTAGCCAAAGAATTTGCAGAATCACTAGCATTAAAAAAAACAGGAATATGTCCCTGCAATAAGAATGTTATTGATGAGTCACAACTGGCACCATCTTTTATATATGAAGTCAATATGGAAGTTCAAGATATTGATAATGGTGGGATGGAGGAAGTCGAACACATTGATAATGGGGAGGTGGAGGAAGTAGAAGATATTGAAACAGTTGAGCATGCACCTCAAAATCAGGATGAACATACAGTCGCCACAGACATAGCACAAGACATGGAAGATCAACACATTTCAGCAGTTCCAATTGAAAATCTTGACACAGTACATGAGAATGAAAACCAAACTGAAAAAACAACTGCATTCTTTGAAAAGAAAACAATAATCAAAGCTGTAGTCAAAAAGCCAAAAAGAAAGTTTAAACCCCCTTTTATAGCTGGCAGTCTGTTAAAGAAATGTAATCAGGAGATTATGCAGACTTCCGAGTCAAAGATGTCTGCTGTCAACTCAACAGAGACAAGTAAATTGTCAAAAAAAGCTACTAGTAATAAGAAAAGATCCTTACAAGAAAGAAAAATCAACAAATCTGTGGTATCAAAACCAAGTACATCTGGTACCTCTTCAAAGGGAGGCCCTATAAATTTAATTTCAGAAGATTTTGATGAAGACTCAGTTGAAGATGATGTTCGGGATGAGGATTTGTGTTGTGTCTGTGGTGAATGGCAGCCCAAGGAGTTGAGAGGTTATTCTACATCACAAGGTTTTCAAGCCCATGATCAGTTCTCAATATTCATAAAGGAAGAGGAACCAAATTTCGAAGCATTAACATTAACATGCCTATCAAAATATAGCGACACACGATCTACAAATACTATAAAGATATCAAATAAAAATGAAGATCATGATCATGTTGATGTTGATGTGAATTATGATATAATAAATACAGGGCTGTTAAATAAAGAACATACACCTTTGTCCTTACAGCATATTACTAATATAAATGTTCCCGCTATGTCCATGCTACATGGTCAAGCCACGGTAAATTCTGAAGATATTGAAATGATATTCGACAAAAGAACTTGTGAAAAAGAACTACAAGACTCTGTGTTAAAAATTATTGATGTTCATAAGGTTGAAATTCAAAATGATGATATTGAGAAGGTTAAAGGTGAAAATGGTGAAGTTCATAAGGATGATGTTGACAAGGTTAAATTTCAAAATGATGAAGTTCATGAAAATGAAATGGAAAAGGTTATGTTGAAAGTAGTAATCCACAATCATGTTCAATGGAAAGATAAACAAATAAAAAGCACTGAAATTATGAAGGAAGTAAATATTGAAACTGAAATGAATTCTGATAAGGAATCTCATGAAGTAAATGAACAGAACATACTTCCATCCAATGTAACAAAAAATGATATTAGCTCAGGTAAAAGTAATATTGATCCAAAGAAGGAAGGATATAGGTGTGAAATTTGTTTGAAAATCTTTAAATTTAAGACATGTTTAAAAAATCATAGATCAAATGTATGTTGGAAGCAGTGTCCAACGTGTTTCAAGAAGTTTGATAACTCAAATGATTTTGAAAACCATTATATAATGCATATTCAGAATTATCAACATAAATGTCTTATATGTTTCAAGCGTTTCAGAGATGAAGATGAAGTTAAAAAACATCACTGTGAACATGATGAAAAATCAAATAAACCTAAATGTGATGTTTGCTGGAAGGCATTCTCGTCAAAAGATTCTTTAACTAAGCATGTCCAATTAATGCATGGAACATCTGACCAGAGAATTACTACAGATTACTCATGTCATATTTGTTCAAATGATTTCAAATCATTGAACAGTTTAAAAAGTCATATTGATATTGTACACAAGAAGATTGTAAGTTTTGAATGTGAAGTGTGTAATAGAAATTATCGTTGGCGATCTAACCTGAAAAAGCATATGAGATTACACACAGGAAATTATCCATTTTTGTGTGACGTATGTGGCAAGGGCTTTTACTCTGGAAGTAAATTTAAAGCACATATGCTGAAACACAAAGGATTGAAAAACTTTAAATGTGAATACTGCAATAAAGGATTTTATGCTCGATGGAATCTGAACCAGCATCTCGTTATTCATGAAACTGGGGGTCAGTATATGTGTCACATATGTGGAAAAGAATTTAAGCGACCATATAATTTAAGACTCCACATGGCGACACATACGGGCGAGAAGAAATACCAGTGTGATACATGTGGACAAATATTTAGCCGATCGGACAATCTAATAACACATTCACGTAAACACAAAGTTGAATCTGTTCACGACTTTACTCAAAATGAAGTTCAAGATTTTCAGAAGAAATTGGTAAAATGGTATTGTGAAAACAAACGAGATTTGCCATGGAGAAAAGAGGAAGTAAATGAAGCTTGGTCTGGACTGGGATATTATTCAAGAGGAAGAAGACTTTTTGAAGGTGCTAAAAAGGTTGTTGAAGAAATGAATGGAGAAATGCCTAAAACAGCCGATGATTTATTGAAGCATTTGCCGGGTGTAGGGAAATACACTGCTGGTGCTATAGCTTCTATATCATATAAACAGACAACAGGAATAGTTGATGGTAATGTTATACGAGTGTTATGTAGAATGAGAAAGATTGGGGCAGACAGTAATAGTCAGCCAGTACAGGATAAACTCTGTTTAGGTGTTCAAAATTACCCAAGAAAGGCTGGTTTGTGGGAGTTTCCCTCCTTGTTACAGGAAAATAATTCAGAAGATATTTCATCTCTGAAAGTTTTAAAAGATATCGGCGGTCTTTGTGTTGCCACTGTTTTAAAATCGTGTCATGTTGGTGAGACAACAGGAATAGTTGATGGTAATGTTATACGAGTGTTATGTAGAATGGGAAAGATTGGGGCAGACAGTACCAGTCAGCCAGTACAGGATAAACTCTGGCAGCTTGCTAACACAATTGTTGATCCTGATGAACCAGGGGATTTTAACCAAGGTCTAATGGAATTAGGAGCTGCAGTTTGTACCCCAAAGACACCAAGTTGTGTCAAATGTCATGTCAAGGGGCTTTGTTTGGCTTATCTAGAGATAGAGAAAGAGAAGGAACAAAAGTCGAAACAGTTTAAAAAAGAAAATGAAGAAAAAATAAACACTGTCCAAGATATTGAATCATGTGTTCAAAATTACCCAAGAAAGGGTAAGAAGAAGGCAGCACGAGAAGAGAGAACTAAAGTGTGTATTGTATGTAAGAAGAAGAATGCAACCACTTATTATTGTATTGTACAAAGACCAGAAAAGGGGTTATTAGCTGGTTTGTGGGAGTTTCCCTCCTTGTTACAGGAAAATAATTCAGAAGATATTTCATCTCAGAAAGTTTTAAAAGATAGCTGTGGTCTTTGTGTTGCCACTGTTTTAACATCGTGTCATGTTGGTGAGGTCTCTCCACGTCAGGAAATTACATTGTAG

Transcript

Bpl_scaf_53430-0.7

Protein

Gene family

Gene family	Subfamily
Transcription Factors Family	zf-C2H2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00096	zf-C2H2	Zinc finger, C2H2 type	Domain	Interproscan
PF00633	HHH	Helix-hairpin-helix motif	Motif	Interproscan
PF00730	HhH-GPD	HhH-GPD superfamily base excision DNA repair protein	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000445	Conserved_site	Helix-hairpin-helix motif	Interproscan
IPR003265	Domain	HhH-GPD domain	Interproscan
IPR004036	Conserved_site	Endonuclease III-like, conserved site-2	Interproscan
IPR011257	Homologous_superfamily	DNA glycosylase	Interproscan
IPR013087	Domain	Zinc finger C2H2-type	Interproscan
IPR015797	Homologous_superfamily	NUDIX hydrolase-like domain superfamily	Interproscan
IPR023170	Homologous_superfamily	Helix-hairpin-helix, base-excision DNA repair, C-terminal	Interproscan
IPR036236	Homologous_superfamily	Zinc finger C2H2 superfamily	Interproscan
IPR044298	Family	Adenine/Thymine-DNA glycosylase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR42944	ADENINE DNA GLYCOSYLASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000701	Molecular Function	purine-specific mismatch base pair DNA N-glycosylase activity	Interproscan
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0003824	Molecular Function	catalytic activity	Interproscan
GO:0006281	Biological Process	DNA repair	Interproscan
GO:0006284	Biological Process	base-excision repair	Interproscan
GO:0006298	Biological Process	mismatch repair	Interproscan
GO:0016798	Molecular Function	hydrolase activity, acting on glycosyl bonds	Interproscan
GO:0032357	Molecular Function	oxidized purine DNA binding	Interproscan
GO:0034039	Molecular Function	8-oxo-7,8-dihydroguanine DNA N-glycosylase activity	Interproscan
GO:0035485	Molecular Function	adenine/guanine mispair binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K03575	mutY; A/G-specific adenine glycosylase	EC:3.2.2.-	Base excision repair	ko03410	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_53430-0.7 global RNA-seq network