| Gene ID | Annotation | Scaffold | Start | End | Strand |
|---|---|---|---|---|---|
| Bpl_scaf_5334-2.5 | LUPUS LA PROTEIN-RELATED | Bpl_scaf_5334 | 253683 | 255125 | + |
| CDS | |||||
| Bpl_scaf_5334-2.5 | |||||
| Transcript |
| Bpl_scaf_5334-2.5 |
| Protein |
| Bpl_scaf_5334-2.5 |
| Gene family | Subfamily |
|---|---|
| - | - |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF05383 | La | La domain | Domain | Interproscan |
| PF12901 | SUZ-C | SUZ-C motif | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR000504 | Domain | RNA recognition motif domain | Interproscan |
| IPR002344 | Family | Lupus La protein | Interproscan |
| IPR006630 | Domain | La-type HTH domain | Interproscan |
| IPR012677 | Homologous_superfamily | Nucleotide-binding alpha-beta plait domain superfamily | Interproscan |
| IPR024642 | Domain | SUZ-C domain | Interproscan |
| IPR034880 | Domain | La-related protein 6, RNA recognition motif | Interproscan |
| IPR035979 | Homologous_superfamily | RNA-binding domain superfamily | Interproscan |
| IPR036388 | Homologous_superfamily | Winged helix-like DNA-binding domain superfamily | Interproscan |
| IPR036390 | Homologous_superfamily | Winged helix DNA-binding domain superfamily | Interproscan |
| IPR045180 | Family | La domain containing protein | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR22792 | LUPUS LA PROTEIN-RELATED | Interproscan |
| GO terms | Category | Description | Source |
|---|---|---|---|
| GO:0003676 | Molecular Function | nucleic acid binding | Interproscan |
| GO:0003723 | Molecular Function | RNA binding | Interproscan |
| GO:0003729 | Molecular Function | mRNA binding | Interproscan |
| GO:0005634 | Cellular Component | nucleus | Interproscan |
| GO:0005844 | Cellular Component | obsolete polysome | Interproscan |
| GO:0006396 | Biological Process | RNA processing | Interproscan |
| GO:1990904 | Cellular Component | ribonucleoprotein complex | Interproscan |
| KO | Enzyme | Enzyme ID | pathway | mapID | Source |
|---|---|---|---|---|---|
| K18733 | LARP6; la-related protein 6 | - | Messenger RNA biogenesis | ko03019 | PMID: 28812709 |
| 1. Expression trend for Bpl_scaf_5334-2.5 global RNA-seq network |
Maintained by Dr. Jiajie She in Longjun Wu's Lab & Pei-yuan Qian's Lab and supported by Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou) & The Hong Kong University of Science and Technology
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