Detailed information of Bpl_scaf_52780-5.6 in Gigantidas platifrons Gene info
Gene IDAnnotationScaffoldStartEndStrand
Bpl_scaf_52780-5.6SUCCINYL-COA LIGASE SUBUNIT ALPHABpl_scaf_52780537813551246+

Gene Structure
More details in Jbrowse Sequence
CDS
Transcript
Protein

Gene family
Gene familySubfamily
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Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00549Ligase_CoACoA-ligaseDomainInterproscan
PF02629CoA_bindingCoA binding domainDomainInterproscan

InterPro
InterPro termTypeDescriptionSource
IPR003781DomainCoA-bindingInterproscan
IPR005810FamilySuccinyl-CoA ligase, alpha subunitInterproscan
IPR005811DomainATP-citrate synthase/succinyl-CoA ligase, C-terminal domainInterproscan
IPR016102Homologous_superfamilySuccinyl-CoA synthetase-likeInterproscan
IPR017440Active_siteATP-citrate lyase/succinyl-CoA ligase, active siteInterproscan
IPR033847Conserved_siteATP-citrate lyase/succinyl-CoA ligase, conserved siteInterproscan
IPR036291Homologous_superfamilyNAD(P)-binding domain superfamilyInterproscan

PANTHER
PANTHER termDescriptionSource
PTHR11117SUCCINYL-COA LIGASE SUBUNIT ALPHAInterproscan

Gene Ontology
GO termsCategoryDescriptionSource
GO:0003824Molecular Functioncatalytic activityInterproscan
GO:0004775Molecular Functionsuccinate-CoA ligase (ADP-forming) activityInterproscan
GO:0004776Molecular Functionsuccinate-CoA ligase (GDP-forming) activityInterproscan
GO:0005739Cellular ComponentmitochondrionInterproscan
GO:0006099Biological Processtricarboxylic acid cycleInterproscan
GO:0009361Cellular Componentsuccinate-CoA ligase complex (ADP-forming)Interproscan

KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K01899LSC1; succinyl-CoA synthetase alpha subunitEC:6.2.1.4
EC:6.2.1.5
Carbon metabolism ko01200PMID: 28812709
Citrate cycle (TCA cycle) ko00020PMID: 28812709
Propanoate metabolism ko00640PMID: 28812709

Expression pattern
 1. Expression trend for Bpl_scaf_52780-5.6 global RNA-seq network
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