Gene detail

Detailed information of Bpl_scaf_52660-4.5 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_52660-4.5	TRNA MODIFICATION GTPASE GTPBP3	Bpl_scaf_52660	397722	414892	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Bpl_scaf_52660-4.5

ATGGTGCCGGCTGGGTCCTGCCAGGGCAGACCGCCGCACACGGCCAGCACACCTAATGGCGCCGGCTGGGTTCTGCCAGGGCAGGCCGCCGCACACGGCCAGAGAAGTCATAATCCAGCTATCCAGATAATGCATCTATACTGTCATATGACTGGAGAAGTCATCATCCAGCTGTACCCAGATAATGTCTCTATACTGTCATATGACAGGAGAAGTCATAATCCAACTTCCCAGATAATGTCTCTACACAGTCATATGACTGTTACAATGGGTTTGCTGTACAAGACATGTCTATTTGCGCTTAAAACTCAGAAACACTTCTTAAATAAAAACACATTTTGTATAATGTGTCAACAGCCTATACAATTTTATCATAGGAATAAAATATCATTCAGGAAATATTCTATTTACACGTCACAAGAAACGATATTTTCACTTTCGTCTGGTCATGGAAAATGTGGAGTAGCGGTAATAAGAGTTTCTGGTTCAAAAGCTGCAGAAGCATTGTCAGTATTGGGTCGCTTTAAAAGTCTACCTAAGCCAAGGTATGCTGAGCTGAGAACTTTGTATGACCATACTTGTGATATTCCAATTGACCATGGGCTCGTGATTTGGTTTCCAGGTCCAAGAAGTTTCACTGGTGAAGATTGCGTTGAGTTTCAAATTCATGGGGGTCCAGCAGTAGTCGCTGCCATGGCGACAGCTCTTGGTAAAATCCCCGGATTACGACAAGCAGAAGCTGGGGAGTTCACTAAAAGGGCATTTTTTAACAACAAATTGGATCTGACTGAAATTGAAGGACTAGGAGATTTAATTCATGCAGAAACTGAAGCACAAAGACGACAGGCTCTACGACAAATGGAAGGCAATCTTGGAAAGATGTACAACGAATGGAGATCTCGTATCATAAAGATGATGGCAGCTGTTGAAGCTTTCATTGATTTTAGTGAAGACGAAAATATAGAAGAAGATGTTCTAGATCATGTAAATAATGGAATTGAAGAAATTTTGGAAGAAATTAAATGTCATCTTTACGATAACAGACGTGGAGAACGCCTCAGGTCTGGTGTCAGGGTGACAATCATAGGTGAACCAAACGTGGGAAAAAGTAGTCTGCTAAATCTGATTGCACAACGCCCTGCTGCCATTGTGTCTAATATCGCAGGAACAACACGTGATATAGTAGAATCAGCTGTCAACATTGGTGGATATCCTGTATTACTGAGCGACACTGCTGGTTTGAGGGAGTCTGATGATATCATAGAGAAAGAAGGTGTCAGAAGGGCTATTGACAGGGCAAAACATTCAGACTTGAAAGTTGTTATGCTGTCAGCACCTGAGATTGAAAAATATTTCGAAAACAATCCCTCATTTGATCTCAGATTACATGTAGCAGAAACGCTACAGCGCTTAGGAATTGTTCAATCTACAAAAGAGGTGAAGGATGATTCAGATGAGGGTGTCCAGGATCATCACACTAATGATCAAACGCTAATGACAGGCTTTGATTCAGAAATTGTAGTAACTGTGAACAAAAGTGATCTTGGTCAAAATGAAAGGTTAAAAGACTCTGTTGGAGGAAGCACACCATTTCAGATTTGTTTAATATCATGTACAAGACAAGAAGGAATACATGAAATACTAGACATCTTGAAGTGTAAAATTGAAAAATTGTGCGGGGATCCTTTAGTAGGTAACCCAAGTTTAACACAAGCTCGCCATAGACAGCACTTAACTAACTGTGTTTCACATTTACAAAGGTACCAGAGTTATATTTATAAAGATGATATTGTGTTAGCAGCCCAAAGCCTCCGCAAGGCCACCAGAGAAATTGGGAAGATTACAGGAAAAATAACTTCAGAAGATATATTTGATGTAATATTTAAAGATTTTTGTATTGGGAAATAAAATCATACATATATTGTTATTTATAAAACGAAAACAAGTGGAACATATTCGTGGTAATTTGTGACACATATATTCCATATGGTCAACCAAGTCATGGTGGCCACCGTTACACTTTCGAAGTGATGAATTCAACGTAACCAATAGGAACCCTTGGTTCAGTAGCTGTCTTGTTAGCAAGCAACCCTCTATAAAAGAAATTATGATGGGAACCACAAGCTTGGAATATCGTATCAACTGAGAGATATATACTCCATATGCA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01926	MMR_HSR1	50S ribosome-binding GTPase	Family	Interproscan
PF10396	TrmE_N	GTP-binding protein TrmE N-terminus	Family	Interproscan
PF12631	MnmE_helical	MnmE helical domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR004520	Family	tRNA modification GTPase MnmE	Interproscan
IPR005225	Domain	Small GTP-binding protein domain	Interproscan
IPR006073	Domain	GTP binding domain	Interproscan
IPR018948	Domain	GTP-binding protein TrmE, N-terminal	Interproscan
IPR025867	Domain	MnmE, helical domain	Interproscan
IPR027266	Homologous_superfamily	GTP-binding protein TrmE/Aminomethyltransferase GcvT, domain 1	Interproscan
IPR027368	Homologous_superfamily	tRNA modification GTPase MnmE domain 2	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR031168	Domain	TrmE-type guanine nucleotide-binding domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR42714	TRNA MODIFICATION GTPASE GTPBP3	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0002098	Biological Process	tRNA wobble uridine modification	Interproscan
GO:0003924	Molecular Function	GTPase activity	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005525	Molecular Function	GTP binding	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0005739	Cellular Component	mitochondrion	Interproscan
GO:0006400	Biological Process	tRNA modification	Interproscan
GO:0030488	Biological Process	tRNA methylation	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K03650	mnmE, trmE, MSS1; tRNA modification GTPase	EC:3.6.-.-	Transfer RNA biogenesis	ko03016	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_52660-4.5 global RNA-seq network