Detailed information of Bpl_scaf_52347-4.7 in Gigantidas platifrons Gene info
Gene IDAnnotationScaffoldStartEndStrand
Bpl_scaf_52347-4.7UNCHARACTERIZEDBpl_scaf_52347408410411217-

Gene Structure
More details in Jbrowse Sequence
CDS
Transcript
Protein

Gene family
Gene familySubfamily
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Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01139RtcBtRNA-splicing ligase RtcBFamilyInterproscan

InterPro
InterPro termTypeDescriptionSource
IPR001233FamilyRNA-splicing ligase, RtcBInterproscan
IPR036025Homologous_superfamilytRNA-splicing ligase RtcB-like superfamilyInterproscan

PANTHER
PANTHER termDescriptionSource
PTHR11118UNCHARACTERIZEDInterproscan

Gene Ontology
GO termsCategoryDescriptionSource
GO:0000971Biological Processobsolete tRNA exon ligation utilizing 2',3' cyclic phosphate of 5'-exon as source of linkage phosphateInterproscan
GO:0003972Molecular FunctionRNA ligase (ATP) activityInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0006396Biological ProcessRNA processingInterproscan
GO:0008452Molecular FunctionRNA ligase activityInterproscan
GO:0072669Cellular ComponenttRNA-splicing ligase complexInterproscan

KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K14415RTCB, rtcB; tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase)EC:6.5.1.8
Transfer RNA biogenesisko03016PMID: 28812709

Expression pattern
 1. Expression trend for Bpl_scaf_52347-4.7 global RNA-seq network
TOP