Gene detail

Detailed information of Bpl_scaf_52346-6.2 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_52346-6.2	V-TYPE PROTON ATPASE SUBUNIT H	Bpl_scaf_52346	615604	661801	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Bpl_scaf_52346-6.2

ATCACATGATAATTTCCCAAAAATACACAGAGCAGACAACATTTGCCGAAAATGACAAATCTAGCCAATATTGGCAGTGTGATTGGAAATATTGATGATTTAGAAAAAGGAGCACAAGTGGCTACAAGTTTATTACAACAGAGGGCCAATGATGTTAGAAGTAACAGAGTTAACTGGCAGTCATATCTTCAGGGTCAGATGATTTCACACGAAGATTTCCAGTTTATTTCAAAATTTGACAATGCCAATTCTGAAATAAAAAATGCCATCTTGACAGACAATGCTCAACAGTTTGCAAAGACAATGTTTAGTTTGATGAACAGAATAGCCAAAGATCAGACACTACAATACATACTGACCATGTTAGATGATGTCTTACAGGATGACAAGGGAAGAGTAGAGATATTTAAAGAGTATTCCAGGAAAAATAAAGAGTCAGTCTGGGTTCCATTTCTTCATCTTCTCAACAGGGATGATAGATTCATTGTCAATCAAACCAGTAGAATCATTGCTAAGATAGCTTGTTGGGGAAAGGAACTGATGGGACTTGAGGATCTGAAATTTTATCTTAATTGGTTAAAAGACCAACTCCGACTTCCTGGTAACGAGTATATGCAAACGGCAGCACGATGTTTACAAATGATGTTAAGAATAGACAAATACAGACACGTTTTTGTTGATGTTGATGGTATTGCTACGATAGTAATGGTGTTAGTAGGATCTAAAACTGGTTTCCAGATTCAGTACCAGTTGATCTTCTGTTTATGGTGTTTGACCTTTAACCCATTCTTGGCAGAGAAAATGAACAAATATCAAGTGATTCCTACTTTAGCAGACATTTTAAGTGAAACAGTGAAAGAGAAAGTCTGTCGGATTATTCTAGCTTCATTCAGAAATTTGTTAGAGAAACCAGGAGAAAAGGAGTTTGTGACAGACCATGCTTTATCAATGGTTCAGTGTAAAGTGTTGAAACAGTTGGAGTTATTAGAAGCCAGGAAATTTGACGACCCAGATATCGTAGATGACATAGAATTCCTGACAGAAAAATTACAGTCATCAATACAAGATCTCAGTTCATTTGATGAATATACAACAGAGGTGAAATCAGGGAGATTAGAGTGGAGTCCTGTACATAAATCTGACAGATTCTGGAGGGAAAATTGTATCAGACTTAATGAGAAAAATTATGAATTATTAAAAATTTTAGTAAAGTTATTAGAGACGAGTAAAGATCCTTTGATACTATCTGTAGCTGCACATGACTTGGGAGAATATGTACGACACTATCCTCGTGGCAAAAATGTAATAGAACAACTAGGAGGGAAGCAGTTAGTTATGCAGTATTTATCACATGAAGATCCTAATGTTAGATTTGAAGCTCTTATAGCTGTACAGAAACTGATGGTACACAACTGGGAATACCTAGGTAGACAGTTAGAAGCCAGTGAAAAACCAAAAGACGCTACACAGCTAGTACCAACTAAAGCTTAAAATACATTCCATTATAACTCTGTATATATAACATTCAGATCTTGTAACCTAAACGTGTCAGACTGTTAGTGGGTAGACAAAGGCTTCAAGTCTACTTCTGATCAACTTGTTCACAGGGATGATTTTTGTCAGTTATTTAACTGATTTCAGCTGTTTTCCTTTGGAGAGAAATTCCTGAGAGTTGCAGGACAAAGCCAAAAGAAATCAAAACTGAGCCATTTGAAAAGGGGGGTGTAGATGGTTTCAGTTATTTTTCATTGATTTTCAGTTATTTTATTTTATTGTCAGAATCATCCCTGTGTTCATCAACAAATGAAATTTGACATTTCAACTACACAAAACAAAATGTATCTTTCTTTGGATATCAATTTCTTGGTTTATTAAATCATGAAATGAAGAACGCTAATTGTTTCTTTGTCAACATAACCAGATGTTATTGTATTGTATAGTTAAGTCATTTGTGAATGGAAAAAAAAAAAAAATTGTAAAAAAAAAATATTCTAAACAATGAATTGGTTGTGAATTCAGAATGGTATGAAAAGTTCACATAAGATTTTAAACAAATTTATTGAGAATTGATTCTTGTTTGCAAAAAACTTGTGTATATTTTGTAATGACCTGTGATATGTATATTATATTGGCAGGACCAGATATAACTGTTTGTAGGACAAGCTGTATCATGATTTATATCCTTCATCTGTCATGATTTCTATTTTGTCCTGTTGTATCAACAAACTCCTCACAAACAATCATATATATCCCACGGCTGATCTTGCTCCAATACTCTCCAAGGGCTTAATGTGTTACGTAATTGGATCTAACAATTCATACAAGCCTATCACCAATATGGCGTGGGTTTGTACCCGGCTTTATAAATTACAAAAAAGGGTGCACTCGACTCGCAGTCGCAAATGATAAAGTTGACCAGTTGCTTACCCAGGGTCGGTGGTTTTCTCTGGCTTCCTCCACCACTAAAACTGGTCGCCATGATATAGCTGAAGTATTGCTGAAAGTGGCGTTAAGCACCAAAAATTCAAATTCCAATACTCTATACTCATCTCCCATCAGACAAATTGACTGAGAAATCCTCGTCATGAAATATTTGTCTCAAATCTGATTGACCAGCCTCAGTTTGTAGGTCTTATTATTTGCACTTATATTACAATTCTGCTGGACCAGAAATTTATTTGACATGACTTTGATACCTTATTTGGATGGTACAGAAAATTTTTATTTATTTATTTTAGTGACCTATCGACCAATCAAAAATTTGAGTAATGTTATGTTGCTTAAACAACTTATAAATATAGACGAATGTAATTTTTTCAATAGACCCACAAGTAATGAGTTTAGAGTATCAGAGCGTGATAGGCCACAGGTTACTGATAATGCTGACAAACATAAGTACTAGTTTCTTCAGCAAATAAACAGTGTATTTGATTAGAAATATCTCCATATAAAGACAAGTTTCATTTGACCAATTCATTGAATATTTTATAATATTTATTATTATTATGATGCAATTGTTTGGGTAGGTGTGATCTTACCCTGTAAAGATTAATAGTTACTTGGAGGAGCTTATTATTTTATTTTTTTTCTGTAAAAGTGTCATGTTATTTGAAACATGTCCTAGAATTAAAAAATGTTTCAACTGGAAAAGACAATTATCTTGTCCCATGTTGCATTATATTCATTTTAACATGATGGTTTTTCAGATTTGGGGAGGTAAAAATATATGAGGGTGGGAATGGGGCGTGATATACAATGGCTCATGGTAAATTTTTTGCTAAAAACGGTTTTCTTTCAATTTTATATCTAATGGTACCTTGAAAAAGTGGGTTTGACAAACCTCTTTCATAATTTCAGTATGCAACTTTAGTGAGAAAAGGGAAAAATCAGGTTTGACGAACCACCACAATATGGATGTAATGATAACGGTAGAGAAAATGGCATTTGATGCTTGATTATAAAGGGCATTACTACCCTTGTATATATTGTACTTGATGAAACGCAATCAGATAAATGAGTTACCTGAAGATGATCTAATATAGTTTGTTTTGACAGGTTATGTTGTAATTTAATATTTATAGGAGAAGATATTTCATACATGTTGTAACCAAGAGGAACGGTAGTGTGTTTACAATATTAAATGTCTAGTC

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03224	V-ATPase_H_N	V-ATPase subunit H	Repeat	Interproscan
PF11698	V-ATPase_H_C	V-ATPase subunit H	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR004908	Family	ATPase, V1 complex, subunit H	Interproscan
IPR011987	Domain	ATPase, V1 complex, subunit H, C-terminal	Interproscan
IPR011989	Homologous_superfamily	Armadillo-like helical	Interproscan
IPR016024	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR038497	Homologous_superfamily	ATPase, V1 complex, subunit H, C-terminal domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10698	V-TYPE PROTON ATPASE SUBUNIT H	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000221	Cellular Component	vacuolar proton-transporting V-type ATPase, V1 domain	Interproscan
GO:0005765	Cellular Component	lysosomal membrane	Interproscan
GO:0046961	Molecular Function	proton-transporting ATPase activity, rotational mechanism	Interproscan
GO:1902600	Biological Process	proton transmembrane transport	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K02144	ATPeV1H; V-type H+-transporting ATPase subunit H	-	Oxidative phosphorylation	ko00190	PMID: 28812709
			mTOR signaling pathway	ko04150	PMID: 28812709
			Phagosome	ko04145	PMID: 28812709
			Lysosome	ko04142	PMID: 28812709
			Synaptic vesicle cycle	ko04721	PMID: 28812709
			Rheumatoid arthritis	ko05323	PMID: 28812709
			Vibrio cholerae infection	ko05110	PMID: 28812709
			Epithelial cell signaling in Helicobacter pylori infection	ko05120	PMID: 28812709
			Tuberculosis	ko05152	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_52346-6.2 global RNA-seq network