Detailed information of Bpl_scaf_52189-3.6 in Gigantidas platifrons Gene info
Gene IDAnnotationScaffoldStartEndStrand
Bpl_scaf_52189-3.6PROCOLLAGEN-LYSINE,2-OXOGLUTARATE 5-DIOXYGENASE/GLYCOSYLTRANSFERASE 25 FAMILY MEMBERBpl_scaf_52189325783362754-

Gene Structure
More details in Jbrowse Sequence
CDS
Transcript
Protein

Gene family
Gene familySubfamily
--

Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF031712OG-FeII_Oxy2OG-Fe(II) oxygenase superfamilyDomainInterproscan

InterPro
InterPro termTypeDescriptionSource
IPR001006Conserved_siteProcollagen-lysine 5-dioxygenase, conserved siteInterproscan
IPR005123DomainOxoglutarate/iron-dependent dioxygenaseInterproscan
IPR006620DomainProlyl 4-hydroxylase, alpha subunitInterproscan
IPR029044Homologous_superfamilyNucleotide-diphospho-sugar transferasesInterproscan
IPR044861DomainIsopenicillin N synthase-like, Fe(2+) 2OG dioxygenase domainInterproscan
IPR050757FamilyCollagen-modifying Glycosyltransferase 25Interproscan

PANTHER
PANTHER termDescriptionSource
PTHR10730PROCOLLAGEN-LYSINE,2-OXOGLUTARATE 5-DIOXYGENASE/GLYCOSYLTRANSFERASE 25 FAMILY MEMBERInterproscan

Gene Ontology
GO termsCategoryDescriptionSource
GO:0005506Molecular Functioniron ion bindingInterproscan
GO:0005783Cellular Componentendoplasmic reticulumInterproscan
GO:0008475Molecular Functionprocollagen-lysine 5-dioxygenase activityInterproscan
GO:0016705Molecular Functionoxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygenInterproscan
GO:0017185Biological Processpeptidyl-lysine hydroxylationInterproscan
GO:0031418Molecular FunctionL-ascorbic acid bindingInterproscan

KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K13646PLOD3; lysyl hydroxylase/galactosyltransferase/glucosyltransferaseEC:1.14.11.4
EC:2.4.1.50
EC:2.4.1.66
Lysine degradation ko00310PMID: 28812709
Other types of O-glycan biosynthesis ko00514PMID: 28812709

Expression pattern
 1. Expression trend for Bpl_scaf_52189-3.6 global RNA-seq network
TOP