Gene detail

Detailed information of Bpl_scaf_52110-5.12 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_52110-5.12	ER LUMEN PROTEIN RETAINING RECEPTOR	Bpl_scaf_52110	573397	583489	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Bpl_scaf_52110-5.12

AAAATTTCCCACAAGTCAGCGCAGGCCACGTCCGCAGCCGCCATAGATTCAATAGTTTTGAACGTGGAGCACGTACTTGGTGGCCAAAATGAATATTTTTAGACTTTGTGGGGATATGTCCCACTTGGGGGCTATTATAATTCTGCTTTTGAAGATGTGGAAGACCCGTTCCGTCGCTGGAATTTCAGGCAAAAGTCAGATTTTATTTGCCATAGTATTCGCCACTAGATACCTGGATCTATTTACATCATTCATTTCAATATATAATACTTCTATGAAGGTTTTTTTCATCACCACATCTTTATTCACAATTTATCTGATGTACTTTAAGTTCAAGGCTACATACGACAGCAACCACGACACATTTCGTGTTGAGTTCCTGGTTGTACCTGTTGGAGGATTAGCTTTTCTCGTTAACCATGAATTTGCTCCCCTTGAGATTCTGTGGACGTTCTCTATCTACTTGGAGTCAGTTGCCATCCTTCCCCAGCTGTTTATGGTCAGTAAGACAGGCGAGGCAGAAACAATAACGAGTCACTACCTGTTTGCCTTGGGATCATATCGTGCCCTGTATCTGTTTAACTGGATTTACCGATATTATGCTGAAGGATTCTTTGATCTTATAGCTGTAGTAGCTGGAGTTGTACAGACAATATTATACTGTGACTTCTTCTATCTCTATATAACTAAGGTACTGAAAGGAAAGAAGATTTCTTTACCAGCATGAGAGCTTTAGATATTCAGAGATTGGACCATTATATGACATTTTTATTTTGGGAAATTAGGATTTGTTTCAAATATTTTGCATGATGTGTGAAAAAGTGAGTGAGTTGTTGGTGCTTTCTACGTGCTATAAGGTGCCACGATAATCAACAATGTCAGGAGAATCCCTGATTGTAATATGTTATTACAACCAGTTAAAAGATTGAATGTTCAATTTGTCAAAATGAAAAACTTGAAAGGCATTGGAATTTTTTCTTGTTTTTAAATTTTTTTTTTATTATTATTATTAGTTTATTGAATTTTTGCAAAAAGTAATAAATCTTGTAGGTGAAACTTGGGTTTTATAACATACAAATGGCAAAAGTCCTTTCTGACGTGAACAAAGTAAGACTTGTTCAACAGGGTAAGTACTGACAGACTGAAAATAAACATGTAGACCTATACTGACAATTATTTAAGCTTAAAAACATATATTAAATTTTCAGCTGATTTATTTATTTTTAAAATGCATTAACATTGTATAAACACTGGACAGATTTCTGTGGTAAAATACAAAAGAAAATTTCTAAATAGTGTATAGTTGACTATTTATGACTATTTTGTACAATAAATACCTTGTATCATTTCAGTGTATAATTATTAACATGCTTATAGAATGGAGTTTTCATACATGTAATAGAGAGGCTGGTGTGAATGTACATTTCATAAGAGATTCATGTTTAATGCAAACAACTGTTCTTAATTCTTGACAAACATTTAATCTCATTTCTAGAGGTAATAAAATTATGTTTTCATAGAATAAATATTTGAGATTTCAAGTAAATGTTTGTGTTTTATGAGATATTTAGCAGCATTTTGAATAATAAACTGGAACTTTGTCAAAAAAATGTATTTCATTTATTAAAATTTTTTTTATTGACAGTACTGTATACTTTTTGTCTGGTAAAGGAATACACAATAAATACTGAAGGTTAGTTTTTCATGGTAGACATGTTATAATGATGGACAACTTTTTCTAGTTGAATTTAATGATCTAGACAATAAAATGCTGACCGTGCTAGGACATTTCTAATAAATGGCCCAAATTTGTTGCTGCAGAAAAATGTAACACCCTTGTTCTGAAACATATTCAAATACCACCACCTTATCTTTCCTCCACAATTGTTGACAGTGGCAATAAACACCATAGCCCTAACCCTTTTCTCCACATTTAAACAATGAATCTATCAATGGTTTCAGTTATAGAATGATAATTTAGTCCTACCATTGTAAATATTTTGAAAAACTCTCTTGCCATGAAAATTTATACTACAAAATCATTGTCATATTTTATATTTTTTCTTTTATCTTTCCTTTTTCAAGGAATACATTACTCATGATTTAAGCAGATGTCTCACTGATGATGAATTAAAGTGCTACCTATAGCTACATGTATAATATCATGATTCAAGTGCAATTGTATGAGTGAAAACGAAATTGTATTCTATGAAAAGTTACATGTAAATAAACAATGTAATGTATTATGTGAAATAAACATCACATGTTTTAGTCAAATTATGTGTATTTTATTTGCCTTCCATAAGAATAGGCTAGAACTCGCTAAACCATGTGAAATGGACAACTCTTTTCGTCGTGATTTCAATTAAATTGTCCTACTTTTACCCCCAAGGCAAAGTTTTTGTCACCCTGTGAGTTTTTGGTAGCCAGTCTTTTTTTCTCAGCAGAAGCTATTCAGAAGTTTTCCGATTTTCCCTCAGCCCGCATGTGCTGGATTGTTTTTGGTGTTTTTTTTCAAGTCTGGCAACAGATTTTCATTGTTGGTGATTTTTTTAATGACATATTTTTCAGGACATCTTTTTTTCCATTGCCCATTGCAAAATAATTTTCATTTACCTTAAATGTCATAATCACTGAATCACTACATGTAATATTTATATGTAACAAAACCATGTGTAATTGTGTAGTG

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00810	ER_lumen_recept	ER lumen protein retaining receptor	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000133	Family	ER lumen protein retaining receptor	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10585	ER LUMEN PROTEIN RETAINING RECEPTOR	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005783	Cellular Component	endoplasmic reticulum	Interproscan
GO:0005801	Cellular Component	cis-Golgi network	Interproscan
GO:0006621	Biological Process	protein retention in ER lumen	Interproscan
GO:0006888	Biological Process	endoplasmic reticulum to Golgi vesicle-mediated transport	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0046923	Molecular Function	ER retention sequence binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K10949	KDELR; ER lumen protein retaining receptor	-	Vibrio cholerae infection	ko05110	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_52110-5.12 global RNA-seq network