Gene detail

Detailed information of Bpl_scaf_52097-5.3 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_52097-5.3	ZINC FINGER PROTEIN	Bpl_scaf_52097	521596	534273	-

Gene Structure

More details in Jbrowse Sequence

CDS

Bpl_scaf_52097-5.3

GAAAGTGAGGGTGTGGAACCAGTAAGCAAAGTACAGAAAACTGATGTAAACCAGTCAGATATCCATGACAACAATAGCCATGACTCAGTCCATGACAACACAACAGATAACCATGACAACACAGAACAACAGACAAAAGTAAACACACAGGTTGTTGTTCCGATGGAAGTCGTCACACCTGCCATTACCACCGAGAGCATTCAACCAGATTCCACCAACATTCCATCAACCAACATAACAACAATGGCTGGTCAGAAATCAACCGATGAAGAGAAGCTACAAGAGTACCTTAGTCAGACCAACACAGTAGTTATTTTCCCTGAACCTGTCAGTGATGGGGATGACGGTGACAATGATGATGATGAAGACAGAGTAAACACGTCACAAGATCTGGAAAACTGTTTTGGTCTAGATGAAGACATCATCCTGAAGTGTGCCCACTGTGACTTGACGTTCAGTCGTTTTAACGTACTACGGGACCACATGAGAGATGTTCATCCTGACCTACCAATCAAGTACCTCTGTCCAAAATGTGACGAAGCATTCCTACTCAAGTCTCATCTAGATAAGCACCTTGCCATGCATTCCCCGACATCACAGTCCTGCAACATCTGCAACAAAACTTTTGCCAATGTGTACCGTCTTCAGCGACACATGATCAGCCATGATGAGAGTACTGACCTACGCAAATTCAAATGTCCAGAATGTGGAAAGGCGTTCAAGTTTAAGCATCATTTGAAAGAGCACATCCGTATCCACAGCGGAGAGAAGCCTTTCCAGTGTCCAAACTGTTCCAAGCGGTTCAGCCATTCTGGGTCGTACAGCAGTCACATGACTTCAAAGAAATGCTGGGTGGTGAATCAGAACAGAACCTGTCCTCCATCAGTAGAGACGACCAGTAGTGCCATCAGACCCGGAATCAACACCACTATGCACTCTTACCCACATCCCATGATGCATTTCGATCCTTTGAAGCCTGGTATACCTGCGTACTATTCACCCGCTGGAGCCAGATTCCTGCCGATGTATCCAGTTTCTCATCATGCCATCCGGCCAGTCATGACATCATTACTTCCTCAGTCACTTGCCATTCCACAGTCAACAGCAACTCCATCACATTTCGTCATGGCAACCAAGCAGATCTCACCAGATGTCAATTCCAACACCAAGGTAGTAACTACAAGCACAATAAAACAGGAACCAGTTGTCGAGAAAAAGGAAACCAGTAATGAACCAGTATCAACTCCACAACCAGTAGTAATAGAGACATACAAGTGCAAGTTCTGCTGCGAGATCTTCACCAGCGCTGTCAACTGTCACCAACATGAGAGATACATGTGTAAGAAAGATGAGGTCACCACTAGTAGTAATGCCAGTAGCGATGAGAGTAAGACCAACCAATCAACTTCATCTGAAGCTGTGACCAGCGATGAGAAATCCAACGAGACCCTGTCTTGTCGATTCTGTGACGAGGTTTTCAACAGTCCAGTCAGTTTACATCAGCATGAAAGATATATCTGCAAACTCAACAGAGACGTTGGCCAACGCATCAGTGATGGCAGTCCACGTAACTCTCCTAGCAGTAGTATGTCAGACCACAGTCACATTCTGTCCATTGCTAGTGGTAGTCCTGAGACAGAGTCAGAAGACCAAGATGACAAAGATGACAATGCCCTCAATGACAGCAAGAAGTTCCGTATGAGGTCGTTAATCAGCGATGAACAGCTGCACGTCCTGAAATCTTACTACAGCATTAATCCTCGTCCACGGAAGTACGAGCTAATCCGTATTGGCAATGAGATTGGCTTTCCCAAGCGAGTGGTCCAGGTGTGGTTCCAGAACATGAGGGCTAGAGATCGTCGACGTGGTAAAGAGGTTCCATATTTCCCATCTATGGCCAGGTTCAAGCGTGACAGTCCTTCTCATTCCTTCAGTGACTCCAGATCATCGACTCCGGCCATACTTTCAGTACATCCTGTAGCAGCTCACGGAGGCAGCAAGAAGGTCAGCAATACAGCATCGCGTTCAGGAGAACAACCACTAGACTTGAGTACCAAGCCAGCACCGGCACACAGCAACAGTAGTAGTCCAGCTTCGTGTCTCACACCACCAGCCACGAACCATCCTAGAGACGAGGTCCTAAACCTGAGTGTCAAACAAGAATCGTCGTCCTCACATTCTAAGCCAAAACCAAACATGGAGCATGCCACTAAACTACTCAGTGACAGTCTGAAAGATAGTATGTTCATGAAGACTCCACCTCACAGGTACCCCATGGACGGTAAACTACAGAGCAGCGCCATCTACAAGTACATGCAGCAAGAAGGTCTTTTTCCAGGCTACTTCCTTGGCAATCCAGTTGTCACGACGACACCATCAATGATCCATCAAGCTCCACCGCACAGTCACACCAAGATCATTCCAACCTGTGAGCCAGCCATCATCACATCATCACACCCGATGTACCACCCATACAGCCGACCAGACACCAATAACATTACCATTTCACTACAGCAGAAAGTTCACCTCGCTATTAGCAAGATTCACCAGGCCCGTAACGCACCAAAGCATGACGATGACGACGACAGCCAGACTGACAGTAGTTGTAGCAGCGACAGTTTTAGCCACCGACCACAATACAATGGTATCCACTTTGATGCAGCCATGGAGCATGCCACCCACAATCTCGCCACTCTTGCCGAAGTCAGCCTAGCAGATCGTGCCAACCTCAACGTCGAGAACGACATCAAACTGAAACGCATGCGGAAGAAGTCTTGGAGACAGGTAGAGCGTGACTATATGGAGTCAGAGGAGATCCAGTTAGACCTTGACGAAGCCTTGTTAGACGAGGACCACCCTTTCCGTAAAAAGCGTCGTTCCTGGAAGAACCACCGTATGGAAGCTGACGATGGGTTGTATGGCTGTGACCAATGTAAGAAGATGTTTAGTAAGCAGAGTTCCCTGGCCAGACATAAGTATGAACATTCAGGTGCCCGACCTTTCAACTGTGAGATCTGTCACAAAGCATTCAAACATAAACATCACCTGACCGAGCACAGACGTCTACACAGCGGTGAGAAACCTTTCCAGTGTAAAAAGTGTGGTAAGCGTTTTAGTCACTCTGGTTCCTACAGTCAGCATATGAATCATCGCTACAAGTACTGCAAGCCAACTCGTGAGGAGTTCAACTGTACTATCTAG

Transcript

Bpl_scaf_52097-5.3

Protein

Gene family

Gene family	Subfamily
Transcription Factors Family	Homeobox
Transcription Factors Family	zf-C2H2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00046	Homeodomain	Homeodomain	Domain	Interproscan
PF00096	zf-C2H2	Zinc finger, C2H2 type	Domain	Interproscan
PF13894	zf-C2H2_4	C2H2-type zinc finger	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001356	Domain	Homeobox domain	Interproscan
IPR009057	Homologous_superfamily	Homeobox-like domain superfamily	Interproscan
IPR013087	Domain	Zinc finger C2H2-type	Interproscan
IPR036236	Homologous_superfamily	Zinc finger C2H2 superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24394	ZINC FINGER PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K09299	ZEB1_2; zinc finger homeobox protein 1/2	-	MicroRNAs in cancer	ko05206	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_52097-5.3 global RNA-seq network