Gene detail

Detailed information of Bpl_scaf_52012-3.18 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_52012-3.18	ELECTRON TRANSPORT OXIDOREDUCTASE	Bpl_scaf_52012	339742	355590	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Bpl_scaf_52012-3.18

AAATATATATTTGCAGAACAAGATCTGGACAACTTTCGAACAAGATCCACTATTTTCTCAGTCCATGGTGACGGAATCATTGGAAGAACAAAGAAGGAAGACATTTTTAAGAGTTAAAAGATTATTTGAATATGCCATGGTCAATGATGATGCAGTATTTGTTAACCCGTTGAAACATAAAATCTTCATTGATTGTCTGGGAATGTATGACTGGGCATTGATGGCAAAGTATCATTTGACTGTTGAGTTTACTGCTGTCACTATAGAATCAACAGGATCATCTAGACACGCAGAAATAGCTAAAAAACTAAAGTCATTCGAGTATTTTGGTTGTTTTTCACTGACAGAGCTGAGTCATGGTAGTAACACAAAAGCTATGAGAACAACAGCAACCTTTGACCCTAAAACACAGGAATTTGTCTTAAATATGCCAGACTTTGAAGCGACCAAAATTTGGTCAGGAAACTTGGGGAAAAATGCCACCCATGCTCTGACATATGCCCAGTTATATACTCCAGATGGAAAATGTCATGGTCTACATTCCTTTGTTGTTCCATTAAGGGACCCGGGCACACTGAGAAGTTACCCAGGTGTCATCATCGGAGACCAGGGTGAAAAACTGGGACTAAATGGTCTTGATAATGGGTTTATGCAGTTCAACGATTACAGAATTCCTAGAGAATATTTGTTAAATAGAACTGGTGATGTATTAGAAGACGGAACTTATGTTACACCATACAAGGACCCAAACAAAAGATTTGGAGCATCACTCGGAGTTTTGTCAACGGGTAGAGTTGGTATAACAGGATTTTCTACATGTAATCTAAAACTGTGTATGCCTATAGCTATCAGATATTCAGCAGTCAGACGGCAGTTTGGTCCTCAAGACGGAGAAGAAATACCTGTCTTAGAATACCAATTACAGCAATGGAGGTTGTTGCCTTTTCTTGCTGCTACATACATTATGGAACATTGGTCAGAGACGTTCTTCATGGATTTTGTTAGAATAAGAATAGGTATTATGATGGGAGACAATTCAGAAGAACAGGCCGAGTTGGGCAAAGAGATACACGCCTTGTCCTGTGCCAGTAAACCATTAGGAAGTTGGATCGCTAGAGATGCTATACAAGAATGCCGTGAAGCTTGTGGCGGTCATGGGTATTTCTATGTGAACCGTTTAGGTGTTTTACGTAACGACAACGACCCTAATTGTACATATGAAGGTGACAACAATGTTATACTACAACAGACAAGTAACTATTTACTGGCAAAGTTGGAACAAGTCAGAAAAGGTGAAAAGGTAACAAGTCCTTTGGGGAGTATAAACTTTCTAAATGACATGGACAACCTACTAAAATCAAGATTTACAGTGAGAAATGTAGAGGAATGTATCAGACCAGAAGTTTCACTGAATGCCTACAAGTGGTTGGTTGTTAGACTACTAGTAGACAGTGACGCCAGACTGAAACAGAACCTAACATCTGGTAAAGACAGCTTCAGTGCCAGAAACGACAGTCAAGTGTATTACTGTAGAAGTCTGGCTATAGCTTTTATTGAGCTGACAGTTTTAGAAAGATTTTACACAATGTTACAAGAAGGTAAAAATGGTGAAGATGTTCCTGCTGAGTTAAGACCTGTGTTGACTAGAATCTGTTCTCTGTTTGGACTGTGGAGACTAGATCAACATTTAACAACACTCTATCAAGGAGGGTACATTTCTGGCAGTAATCCACCACAGATTATTAGAGAAGCTATATTACGACTATGTTATGAACTGAAGGATGATTCAGTGTCTCTGGCCGATGCAGTAGCACCAACAGATTTTATATTAAATTCACCAATAGGACATTCTGATGGAGAGATTTACAAAAATTTGTATAATGCAATGATCCATACACCAAATTGTTTTGAGCGACCTGATTGGTGGGAAGACTTTGTAAACAAGCCTGTGATTGGCAGTAAATCCAAATTATGATGAATATTGGAAACTATATGATGTTAGAACAGAGATTGCTACTCAAAATGTTGAAAACATTGTCAAATATAGAAAAAAACCATTGGAGTCCGAAAAAACAAGACATCAAAATTAGATAAAAATTGAAATTCTAATTGTACAAAATTAAGACATCTAAAACAATGTAAGATGCACCTATTAAACTGTTCGTAAAAATACATTGTGGAAAGACAGCTAAATGGAAGATACCATTAATATTATGGTACCAAACACACAGCCCTGTATGGCAGGCCATATTGTCATAGTGTTGTAGACATTCCATGATTTTGGTCTTACTAAAAATTAAAGTTGCTAACTACAAGACATTGGAGTCACACATTCCATAATTAAATTGCCTTTTCACTTTTTTTTTTAATTTCACATATGCCGCGGTATCTTACTACGGTTATGTCTAGGTGCT

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01756	ACOX	Acyl-CoA oxidase	Family	Interproscan
PF02770	Acyl-CoA_dh_M	Acyl-CoA dehydrogenase, middle domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002655	Domain	Acyl-CoA oxidase, C-terminal	Interproscan
IPR006091	Domain	Acyl-CoA oxidase/dehydrogenase, middle domain	Interproscan
IPR009100	Homologous_superfamily	Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily	Interproscan
IPR012258	Family	Acyl-CoA oxidase	Interproscan
IPR036250	Homologous_superfamily	Acyl-CoA dehydrogenase-like, C-terminal	Interproscan
IPR046373	Homologous_superfamily	Acyl-CoA oxidase/dehydrogenase, middle domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10909	ELECTRON TRANSPORT OXIDOREDUCTASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003997	Molecular Function	acyl-CoA oxidase activity	Interproscan
GO:0005504	Molecular Function	fatty acid binding	Interproscan
GO:0005777	Cellular Component	peroxisome	Interproscan
GO:0006631	Biological Process	fatty acid metabolic process	Interproscan
GO:0006635	Biological Process	fatty acid beta-oxidation	Interproscan
GO:0016402	Molecular Function	pristanoyl-CoA oxidase activity	Interproscan
GO:0016627	Molecular Function	oxidoreductase activity, acting on the CH-CH group of donors	Interproscan
GO:0033540	Biological Process	fatty acid beta-oxidation using acyl-CoA oxidase	Interproscan
GO:0050660	Molecular Function	flavin adenine dinucleotide binding	Interproscan
GO:0055088	Biological Process	lipid homeostasis	Interproscan
GO:0071949	Molecular Function	FAD binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K00232	E1.3.3.6, ACOX1, ACOX3; acyl-CoA oxidase	EC:1.3.3.6	Fatty acid metabolism	ko01212	PMID: 28812709
			Fatty acid degradation	ko00071	PMID: 28812709
			alpha-Linolenic acid metabolism	ko00592	PMID: 28812709
			Biosynthesis of unsaturated fatty acids	ko01040	PMID: 28812709
			cAMP signaling pathway	ko04024	PMID: 28812709
			Peroxisome	ko04146	PMID: 28812709
			PPAR signaling pathway	ko03320	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_52012-3.18 global RNA-seq network