Gene detail

Detailed information of Bpl_scaf_50887-8.36 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_50887-8.36	PROLACTIN REGULATORY ELEMENT BINDING PROTEIN	Bpl_scaf_50887	861698	881024	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Bpl_scaf_50887-8.36

TGTATTTGTAAACATGGCTGCCCCTGAAAAAGGTGGCTTGTTGGCACGTTCAGATTTTCCACTGTATGCAGTAAAAGCATTGGATGAAAGACATTTTATTGTAGCAGGGGGAGGCGGTGCTGCGAAAACAGGCGTTGTCAACGCAATTGAGGTGTATGAAGTAAAACAATTAGAAGATAAGCTGTTAGCTAGTAGTATATGTCGACATGACACGGGGACTAAAGCTGTTATGAATGGATGTTGCTATTATGATGGCAGGAAACATGTTTTAGCAGCAGGATTAGATGAACACTGCAAATCAGAGGAAACAGTTAGGAAAAGAAAATCAAATGGTATCAATGAAGAAGAAGAAAAGAAACAAATAAGCTTTGATATTGAAGAAAATGACAGTTTTGTTACTGATTTTAATAAGGACGGAAGTTTTCAAAAAACAGTGCAATTTAGTATGGACCAAACATTCTTAGCTACTGGTGGCGCCGATGGTTTCCTTAGAGTATGGAAGATTGTAACAGTTTCTAGAGACCACTGTGCCTGTGTGTGGAATGCTAAAGATGGAAGTAAAAATTGTGAATTGAAATGGCCACTTGCTGATCAATATAGACATCGAGCATGCAGATATGGATTGATAGAAGGAGATAAAGAAAAATTTAATTTATACACAATTAGTATCCCTGTAAAAAGATCACAGAACCCTTTACCCTGTTACTTGGCAATGTGGGATAGCAGTAAATTTACACCCAAAAGAATGGTCAGTACAGGACAAGAAGTTCTGTCTGCATTAGCCTTGAGTGATGATGGTACTTATGCAGCTGTTGGTACTATATCAGGAAGTGTAGCTGTATTCATTACATTTAGTTTACAGAAATTGTACAGTGTACGAGAAGCCCATAATATATTTGTAACCGGTTTAGATTTTCTACCAAGTTCTAAGGCTAAAGAAGAAGTAACAGGAGATAAAGATTTTACATTACTCAGTATATCAGCAGATAATACCATTCGTGTTCATCAGGTTGCCAAGAGAAATTCATACAGTATAATAGTTTTACTGATTGGACTTGTAGTGTGTGTTTTACTATTGTTCTGGTGGATGTCAGAGATGGGATTATGACATGAGTTATCTCCCATGCTCAAGTGGCAGCCATGAACATTCCATCTATATGACAATGAAGATTTTGGATCTGGTTGGTGGATCATGACACAATTAAAACACAATTAAAATCAATTAAAACATAATTCTGTGATAAACACATATTTTTTTATGTACTGATCTTTTAATTGAGGGTTATAGGTGTACAATTATCTCAATTTTATATGCTTTACGTGTAGAAAATGTAATTTACAAAAATCGTTTTGTTATTTTATCAGCTGGCTGGTAGTTTATCATTATTAGTTAAACTTTGAAGGTAGATACAGTGCATACAAGCTAGTTTTTTTTTAAATTAAATTTCACTGTTGTCCAAAATATGACAATATTCCTACAGCAAGATCAAAGGAAAAGTGTGTAGTTTACAAATAATTTAAGCTATTTCACTTCAATAATATGATGTTAGTCTGTGTTCCACCATCTTTCAGTTCAATCATTCAAAATTATACATTTTTTAGCTAAATTTCTCAGCATTTTTATGACGATTGTCTAGAGATTACAGGTTATTTTCAGACAATCTTAGTCGTTTGTTGAACTTAGTGATTAAAACACCTTGTGAGTACTGTAACAGCATTTCTTAATATTCATCTTGATTTTAAACATTTTTAAACGATCGAATCGTTTAATGCTAGCGCTCGTGTAAACCGGAAGACACTGCTTTACACAAAATGTGTCGCAACCTTCCGCCCAGACAAAACTATAGTCCATATAGAGTCAATTGTAAGAGGGCGAGTAACTTAAATATCAGAAAGAGCATGCATACAACATTCATATATTATAAATCCCCCTCAATATCGGGTACTTGTATGCACGTTTGCTCATCTATCAGTATTTCTTTGTTGCAACGCGGATTTTGCGGATGGATATTTCAATATCT

Protein

Gene family

Gene family	Subfamily
Ubiquitin Family	UBD\|Other\|Beta-prp
Ubiquitin Family	E3\|E3 adaptor Cullin RING\|CDC20
Ubiquitin Family	E3\|E3 adaptor Cullin RING\|DWD

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00400	WD40	WD domain, G-beta repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001680	Repeat	WD40 repeat	Interproscan
IPR015943	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR036322	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR045260	Family	Guanine nucleotide-exchange factor Sec12-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23284	PROLACTIN REGULATORY ELEMENT BINDING PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003400	Biological Process	regulation of COPII vesicle coating	Interproscan
GO:0005085	Molecular Function	guanyl-nucleotide exchange factor activity	Interproscan
GO:0005096	Molecular Function	GTPase activator activity	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0009306	Biological Process	protein secretion	Interproscan
GO:0030176	Cellular Component	obsolete integral component of endoplasmic reticulum membrane	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K14003	PREB, SEC12; prolactin regulatory element-binding protein	-	Protein processing in endoplasmic reticulum	ko04141	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_50887-8.36 global RNA-seq network