| Gene ID | Annotation | Scaffold | Start | End | Strand |
|---|---|---|---|---|---|
| Bpl_scaf_50887-6.11 | DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC1 | Bpl_scaf_50887 | 666057 | 682221 | - |
| CDS | |||||
| Bpl_scaf_50887-6.11 | |||||
| Transcript |
| Bpl_scaf_50887-6.11 |
| Protein |
| Bpl_scaf_50887-6.11 |
| Gene family | Subfamily |
|---|---|
| - | - |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF01191 | RNA_pol_Rpb5_C | RNA polymerase Rpb5, C-terminal domain | Domain | Interproscan |
| PF03871 | RNA_pol_Rpb5_N | RNA polymerase Rpb5, N-terminal domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR000783 | Domain | RNA polymerase, subunit H/Rpb5 C-terminal | Interproscan |
| IPR005571 | Domain | RNA polymerase, Rpb5, N-terminal | Interproscan |
| IPR014381 | Family | DNA-directed RNA polymerase subunit Rpo5/Rpb5 | Interproscan |
| IPR020608 | Conserved_site | RNA polymerase, subunit H/Rpb5, conserved site | Interproscan |
| IPR035913 | Homologous_superfamily | RPB5-like RNA polymerase subunit superfamily | Interproscan |
| IPR036710 | Homologous_superfamily | RNA polymerase Rpb5, N-terminal domain superfamily | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR10535 | DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC1 | Interproscan |
| GO terms | Category | Description | Source |
|---|---|---|---|
| GO:0001054 | Molecular Function | RNA polymerase I activity | Interproscan |
| GO:0001055 | Molecular Function | RNA polymerase II activity | Interproscan |
| GO:0001056 | Molecular Function | RNA polymerase III activity | Interproscan |
| GO:0003677 | Molecular Function | DNA binding | Interproscan |
| GO:0003899 | Molecular Function | DNA-directed 5'-3' RNA polymerase activity | Interproscan |
| GO:0005665 | Cellular Component | RNA polymerase II, core complex | Interproscan |
| GO:0005666 | Cellular Component | RNA polymerase III complex | Interproscan |
| GO:0005736 | Cellular Component | RNA polymerase I complex | Interproscan |
| GO:0006351 | Biological Process | DNA-templated transcription | Interproscan |
| KO | Enzyme | Enzyme ID | pathway | mapID | Source |
|---|---|---|---|---|---|
| K03013 | RPB5, POLR2E; DNA-directed RNA polymerases I, II, and III subunit RPABC1 | - | Purine metabolism | ko00230 | PMID: 28812709 |
| Pyrimidine metabolism | ko00240 | PMID: 28812709 | |||
| RNA polymerase | ko03020 | PMID: 28812709 | |||
| Cytosolic DNA-sensing pathway | ko04623 | PMID: 28812709 | |||
| Huntington's disease | ko05016 | PMID: 28812709 | |||
| Epstein-Barr virus infection | ko05169 | PMID: 28812709 |
| 1. Expression trend for Bpl_scaf_50887-6.11 global RNA-seq network |
Maintained by Dr. Jiajie She in Longjun Wu's Lab & Pei-yuan Qian's Lab and supported by Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou) & The Hong Kong University of Science and Technology
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